Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 2.7e-61 238.4 115 100.0
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 1.3e-26 123.2 125 60.8
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.1e-19 100.1 116 54.3
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.7e-18 95.1 76 67.1
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 6.3e-18 94.4 105 54.3
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.3e-17 91.3 92 55.4
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.6e-16 89.0 117 47.9
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 4.5e-16 88.2 98 54.1
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 5.9e-16 87.8 104 50.0
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 7.7e-16 87.4 79 58.2
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 7.7e-16 87.4 82 53.7
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 7.7e-16 87.4 125 44.0
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.7e-16 87.4 98 51.0
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.0e-15 87.0 82 51.2
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 2.9e-15 85.5 84 52.4
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.8e-15 85.1 87 51.7
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.4e-14 83.2 104 51.9
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.9e-14 82.8 96 46.9
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 2.5e-14 82.4 79 58.2
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.5e-14 82.4 100 52.0
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.5e-14 82.4 81 56.8
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 3.2e-14 82.0 96 51.0
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.2e-14 80.9 96 46.9
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.7e-13 79.0 88 48.9
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 4.6e-13 78.2 59 62.7
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.1e-13 77.8 104 47.1
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 6.1e-13 77.8 79 57.0
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 6.1e-13 77.8 69 52.2
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.9e-13 77.4 105 46.7
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.9e-13 77.4 90 46.7
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.9e-13 77.4 89 47.2
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.0e-12 77.0 73 58.9
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 1.8e-12 76.3 57 61.4
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.3e-12 75.9 79 50.6
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-12 75.5 80 53.8
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 3.9e-12 75.1 75 56.0
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.1e-12 74.7 58 63.8
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 5.1e-12 74.7 94 47.9
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 6.7e-12 74.3 79 46.8
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 8.8e-12 73.9 76 46.1
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 8.8e-12 73.9 79 57.0
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 8.8e-12 73.9 93 48.4
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 1.1e-11 73.6 110 44.5
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.1e-11 73.6 80 45.0
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.5e-11 73.2 68 54.4
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.0e-11 72.8 58 62.1
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 3.3e-11 72.0 58 58.6
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.3e-11 72.0 62 58.1
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 3.3e-11 72.0 91 41.8
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.7e-11 71.2 67 52.2
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 5.7e-11 71.2 86 39.5
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 9.7e-11 70.5 57 54.4
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.3e-10 70.1 76 50.0
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.7e-10 69.7 94 45.7
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 2.8e-10 68.9 69 47.8
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 3.7e-10 68.6 68 47.1
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 4.8e-10 68.2 61 55.7
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 4.8e-10 68.2 68 50.0
Oeu026982.1 Olea europaea HOM05D047474 ORTHO05D004438 8.2e-10 67.4 83 44.6
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.1e-09 67.0 82 43.9
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.1e-09 67.0 91 44.0
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.8e-09 66.2 80 50.0
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.8e-09 66.2 82 46.3
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.8e-09 66.2 92 45.7
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.8e-09 66.2 93 41.9
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 2.4e-09 65.9 59 54.2
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.4e-09 65.9 72 50.0
Potri.001G212300 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.4e-09 65.9 132 37.1
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 3.1e-09 65.5 65 58.5
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 3.1e-09 65.5 86 46.5
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.1e-09 65.5 76 47.4
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 3.1e-09 65.5 94 39.4
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 3.1e-09 65.5 78 44.9
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 4.1e-09 65.1 86 50.0
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 6.9e-09 64.3 92 37.0
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 6.9e-09 64.3 102 40.2
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.2e-08 63.5 70 52.9
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 69 47.8
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.2e-08 63.5 85 41.2
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-08 63.2 73 43.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.0e-08 62.8 88 46.6
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 2.0e-08 62.8 75 48.0
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 2.0e-08 62.8 87 37.9
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 2.6e-08 62.4 79 43.0
Cfa010131 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.4e-08 62.0 63 55.6
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.4e-08 62.0 84 44.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 69 47.8
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 73 43.8
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.4e-08 62.0 69 47.8
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.4e-08 62.0 73 43.8
Lalb_Chr03g0027791 Lupinus albus HOM05D014522 ORTHO05D004438 3.4e-08 62.0 75 50.7
Haze_23519 Corylus avellana HOM05D005304 ORTHO05D004438 4.5e-08 61.6 135 36.3
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 4.5e-08 61.6 70 51.4
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 5.9e-08 61.2 82 47.6
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 5.9e-08 61.2 94 38.3
CsaV3_1G014250 Cucumis sativus L. HOM05D026992 ORTHO05D004438 5.9e-08 61.2 89 42.7
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 7.7e-08 60.8 73 45.2
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.0e-07 60.5 77 42.9
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.7e-07 59.7 86 38.4
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 2.2e-07 59.3 78 43.6
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.9e-07 58.9 71 45.1
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 5.0e-07 58.2 81 38.3
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.0e-07 58.2 64 50.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 5.0e-07 58.2 80 45.0
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.5e-07 57.8 59 50.8
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 6.5e-07 57.8 71 46.5
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.5e-07 57.8 96 38.5
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 6.5e-07 57.8 56 57.1
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 6.5e-07 57.8 64 45.3
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 8.5e-07 57.4 56 50.0
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 8.5e-07 57.4 59 50.8
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.5e-07 57.4 59 50.8
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 8.5e-07 57.4 56 50.0
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 8.5e-07 57.4 62 48.4
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 8.5e-07 57.4 79 40.5
Sed0018639 Sechium edule HOM05D026992 ORTHO05D004438 8.5e-07 57.4 75 48.0
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 8.5e-07 57.4 79 45.6
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.1e-06 57.0 65 40.0
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.1e-06 57.0 78 43.6
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.1e-06 57.0 86 40.7
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.1e-06 57.0 86 40.7
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.4e-06 56.6 57 50.9
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.9e-06 56.2 57 47.4
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-06 56.2 78 42.3
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.9e-06 56.2 100 34.0
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.5e-06 55.8 53 52.8
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 2.5e-06 55.8 94 37.2
Glyma.12G082800 Glycine max HOM05D014522 ORTHO05D004438 3.2e-06 55.5 91 40.7
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.2e-06 55.5 89 37.1
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 3.2e-06 55.5 65 44.6
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.2e-06 55.1 73 43.8
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.2e-06 55.1 71 42.3
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 4.2e-06 55.1 64 42.2
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 5.5e-06 54.7 87 37.9
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 7.2e-06 54.3 77 44.2
Lj3g0006440 Lotus japonicus HOM05D014522 ORTHO05D004438 7.2e-06 54.3 87 41.4
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 9.4e-06 53.9 83 37.3
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 9.4e-06 53.9 96 37.5
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.4e-06 53.9 59 49.2
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.4e-06 53.9 59 49.2
Sc25g0001350 Simmondsia chinensis HOM05D005304 ORTHO05D004438 9.4e-06 53.9 76 43.4


User provided reference genes

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