Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 1.2e-32 142.5 70 100.0
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 1.3e-29 132.5 70 94.3
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 2.6e-27 124.8 70 88.6
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 4.5e-27 124.0 70 87.1
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 7.7e-27 123.2 69 85.5
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 7.7e-27 123.2 70 85.7
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 1.0e-26 122.9 70 90.0
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 1.0e-26 122.9 70 88.6
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 1.0e-26 122.9 70 85.7
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.0e-26 122.9 70 85.7
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 1.0e-26 122.9 70 87.1
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 1.3e-26 122.5 70 84.3
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 1.7e-26 122.1 71 88.7
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 2.2e-26 121.7 70 85.7
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 2.9e-26 121.3 70 85.7
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 3.8e-26 120.9 70 82.9
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 5.0e-26 120.6 70 82.9
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 6.5e-26 120.2 70 84.3
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 1.1e-25 119.4 70 82.9
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 1.1e-25 119.4 69 84.1
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 1.1e-25 119.4 70 84.3
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 1.1e-25 119.4 70 81.4
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 1.4e-25 119.0 70 82.9
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 1.4e-25 119.0 70 84.3
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 1.4e-25 119.0 70 84.3
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.9e-25 118.6 70 84.3
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 2.5e-25 118.2 70 81.4
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 2.5e-25 118.2 70 82.9
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 2.5e-25 118.2 69 79.7
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 3.2e-25 117.9 68 83.8
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 3.2e-25 117.9 73 84.9
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 1.2e-24 115.9 72 81.9
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 1.6e-24 115.5 73 82.2
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.6e-24 115.5 71 85.9
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 2.1e-24 115.2 72 84.7
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 2.1e-24 115.2 71 81.7
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 2.7e-24 114.8 70 78.6
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 2.7e-24 114.8 71 84.5
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.7e-24 114.8 73 80.8
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 2.7e-24 114.8 72 83.3
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 3.6e-24 114.4 70 82.9
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 3.6e-24 114.4 70 82.9
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 6.1e-24 113.6 72 81.9
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 6.1e-24 113.6 72 83.3
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 6.1e-24 113.6 72 79.2
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 1.0e-23 112.8 71 83.1
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.4e-23 112.5 73 79.5
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 1.8e-23 112.1 70 81.4
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 1.8e-23 112.1 70 81.4
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 1.8e-23 112.1 70 81.4
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.3e-23 111.7 73 80.8
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 2.3e-23 111.7 72 80.6
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 2.3e-23 111.7 62 90.3
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 2.3e-23 111.7 71 81.7
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 3.0e-23 111.3 73 79.5
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 3.9e-23 110.9 73 78.1
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 5.1e-23 110.5 73 76.7
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 5.1e-23 110.5 73 76.7
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 5.1e-23 110.5 73 76.7
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 6.7e-23 110.2 65 87.7
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 6.7e-23 110.2 73 78.1
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.1e-22 109.4 70 80.0
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 1.1e-22 109.4 70 80.0
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.1e-22 109.4 73 79.5
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.5e-22 109.0 73 79.5
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.0e-22 108.6 73 79.5
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 2.0e-22 108.6 72 77.8
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 2.0e-22 108.6 69 76.8
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 2.0e-22 108.6 62 87.1
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 2.0e-22 108.6 62 87.1
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 3.3e-22 107.8 70 75.7
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 3.3e-22 107.8 70 78.6
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 3.3e-22 107.8 72 79.2
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 5.7e-22 107.1 70 78.6
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 5.7e-22 107.1 73 76.7
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 9.7e-22 106.3 81 66.7
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 9.7e-22 106.3 72 76.4
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 2.2e-21 105.1 69 75.4
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 2.2e-21 105.1 71 73.2
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 2.8e-21 104.8 72 75.0
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 2.8e-21 104.8 72 75.0
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 2.8e-21 104.8 71 71.8
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 6.3e-21 103.6 74 71.6
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 8.2e-21 103.2 72 73.6
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 1.1e-20 102.8 69 73.9
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 1.1e-20 102.8 61 85.2
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 4.1e-20 100.9 69 73.9
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 5.3e-20 100.5 68 75.0
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 2.6e-19 98.2 71 69.0
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 3.4e-19 97.8 64 79.7
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 1.0e-18 96.3 64 78.1
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 2.9e-18 94.7 64 78.1
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 5.0e-18 94.0 50 94.0
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 3.2e-17 91.3 63 69.8
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 9.4e-17 89.7 64 70.3
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 3.9e-15 84.3 63 69.8
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 8.8e-15 83.2 59 66.1
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 2.8e-13 78.2 59 69.5
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 1.6e-11 72.4 65 64.6
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 1.1e-09 66.2 56 62.5
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 9.4e-09 63.2 37 78.4


User provided reference genes

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