Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 7.2e-99 364.0 196 100.0
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 6.1e-90 334.3 196 91.3
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 1.8e-89 332.8 196 91.8
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 2.4e-86 322.4 196 87.8
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.3e-84 315.8 196 85.7
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 3.8e-84 315.1 196 85.7
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.8e-84 315.1 196 85.7
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.8e-84 315.1 196 85.2
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.5e-83 313.2 196 84.7
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 1.2e-77 293.5 195 80.0
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 1.6e-77 293.1 195 79.5
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 1.3e-76 290.0 194 79.4
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 5.0e-76 288.1 196 79.6
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 1.9e-75 286.2 197 78.2
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 2.5e-75 285.8 196 79.1
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 7.3e-75 284.3 196 78.6
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 1.2e-74 283.5 195 76.9
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 8.0e-74 280.8 195 75.4
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 1.2e-72 276.9 197 75.1
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 1.2e-72 276.9 195 76.9
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 2.0e-72 276.2 198 75.3
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 2.0e-72 276.2 198 75.3
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 5.8e-72 274.6 197 74.1
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 2.9e-71 272.3 198 73.7
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 4.9e-71 271.6 199 75.4
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 8.3e-71 270.8 199 75.4
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 1.4e-70 270.0 196 74.0
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 1.4e-70 270.0 195 74.9
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 1.9e-70 269.6 197 75.6
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 3.2e-70 268.9 199 73.9
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 3.2e-70 268.9 194 74.2
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 4.1e-70 268.5 192 75.0
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 5.4e-70 268.1 195 73.3
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 2.7e-69 265.8 196 72.4
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 2.7e-69 265.8 194 74.7
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 3.5e-69 265.4 196 71.4
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 3.5e-69 265.4 196 70.9
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 6.0e-69 264.6 199 72.9
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 7.8e-69 264.2 194 74.2
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 1.3e-68 263.5 196 70.9
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 1.3e-68 263.5 196 73.0
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.7e-68 263.1 195 71.8
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 3.0e-68 262.3 194 73.2
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 3.9e-68 261.9 196 71.9
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 3.9e-68 261.9 199 72.4
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 8.6e-68 260.8 198 72.7
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 8.6e-68 260.8 198 72.7
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 8.6e-68 260.8 198 72.7
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 8.6e-68 260.8 198 72.7
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 1.1e-67 260.4 196 72.4
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 1.1e-67 260.4 197 73.1
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 1.9e-67 259.6 191 72.3
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 2.5e-67 259.2 200 73.5
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 2.5e-67 259.2 199 72.9
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 2.5e-67 259.2 195 72.8
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 4.3e-67 258.5 198 72.2
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 4.3e-67 258.5 198 72.2
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 4.3e-67 258.5 192 71.9
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 4.3e-67 258.5 197 74.1
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 5.6e-67 258.1 199 70.4
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 5.6e-67 258.1 191 71.7
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 7.3e-67 257.7 198 71.2
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 7.3e-67 257.7 198 73.2
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 7.3e-67 257.7 191 72.3
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 9.5e-67 257.3 199 73.4
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 1.2e-66 256.9 198 71.7
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 1.2e-66 256.9 200 70.0
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.6e-66 256.5 197 72.1
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 2.8e-66 255.8 197 73.1
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 2.8e-66 255.8 197 74.1
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 3.6e-66 255.4 192 71.4
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 4.7e-66 255.0 198 71.7
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 4.7e-66 255.0 198 71.2
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 4.7e-66 255.0 197 71.6
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 8.1e-66 254.2 199 72.9
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 1.4e-65 253.4 197 72.6
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 2.3e-65 252.7 193 68.9
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 4.0e-65 251.9 215 69.8
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 5.2e-65 251.5 192 69.8
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 1.5e-64 250.0 193 71.5
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 1.5e-64 250.0 200 68.0
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 2.0e-64 249.6 196 69.4
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 2.0e-64 249.6 160 80.6
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 2.6e-64 249.2 193 72.0
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 3.4e-64 248.8 197 71.6
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 4.4e-64 248.4 197 71.1
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 5.8e-64 248.1 196 73.0
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 7.5e-64 247.7 199 69.3
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 6.4e-63 244.6 193 68.9
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 1.4e-62 243.4 192 69.8
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 1.9e-62 243.0 202 67.3
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 2.4e-62 242.7 161 78.9
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 5.4e-62 241.5 147 83.7
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 7.1e-62 241.1 197 69.0
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 7.1e-62 241.1 196 69.4
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 4.6e-61 238.4 196 65.8
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 2.6e-56 222.6 194 61.9
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 4.4e-56 221.9 147 78.2
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 9.9e-48 194.1 157 59.2
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 5.4e-46 188.3 166 57.2
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 3.3e-43 179.1 141 68.8
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 5.8e-40 168.3 157 53.5
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 4.2e-38 162.2 105 80.0
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 4.2e-38 162.2 157 52.9
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.5e-37 159.1 158 51.3
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.5e-37 159.1 158 51.3
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.0e-36 157.5 158 50.6
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.0e-36 156.0 194 45.4
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 2.5e-35 152.9 103 79.6
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 7.4e-35 151.4 94 83.0
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 2.1e-34 149.8 102 77.5
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 2.6e-32 142.9 103 75.7
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 8.7e-28 127.9 104 67.3
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 1.5e-27 127.1 92 76.1
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 1.6e-26 123.6 90 75.6
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 2.0e-24 116.7 165 37.0
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 2.6e-24 116.3 86 64.0
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 4.6e-21 105.5 71 77.5
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.0e-20 104.4 167 35.3
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 2.4e-17 93.2 95 58.9
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 7.7e-16 88.2 159 31.4
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.4e-14 84.0 72 58.3
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 4.2e-14 82.4 88 54.5
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.5e-11 73.9 59 61.0
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 4.3e-11 72.4 156 33.3
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 1.8e-09 67.0 91 45.1
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 9.1e-09 64.7 38 76.3


User provided reference genes

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