Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 2312.7 1214 100.0
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1897.5 1200 83.8
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1742.6 1194 76.9
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1734.2 1174 77.1
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1716.8 1161 77.3
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1709.1 1239 73.4
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1706.8 1226 73.7
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1682.2 1160 76.3
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1557.7 1187 69.4
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1556.6 1202 69.5
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1542.7 1199 69.3
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1527.3 1210 67.3
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1493.4 1203 66.3
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1488.8 1206 65.9
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1482.6 1237 64.9
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1477.2 1175 67.7
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1473.8 1175 67.5
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1462.2 1174 66.2
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1445.3 1186 65.4
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1442.2 1186 65.3
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1432.5 1178 65.5
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1430.2 1201 64.6
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1419.4 1185 64.5
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1377.5 1179 63.9
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1374.8 1184 63.6
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1372.8 1128 66.0
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1365.1 1175 63.1
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1360.5 1214 61.7
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1359.0 1183 63.9
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1347.0 1186 62.6
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1346.3 1171 62.6
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1338.2 1183 61.4
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1337.8 1168 62.8
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1328.5 1168 61.6
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1324.7 1168 61.6
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1323.1 1275 58.8
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1316.6 1168 62.0
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1316.6 1177 61.8
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1286.9 1170 61.2
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1278.5 1184 59.8
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1276.5 1182 60.7
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1275.8 1209 59.2
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1274.2 1168 60.3
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1255.4 1181 59.8
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1249.2 1185 59.2
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1237.6 1206 59.0
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1231.9 1193 58.1
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1231.5 1084 63.1
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1214.9 1169 58.4
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1213.4 1184 56.9
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1212.2 1203 56.5
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1206.0 1184 57.0
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1202.2 1191 55.6
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1188.3 1232 55.0
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1185.2 1248 54.7
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1181.4 1187 55.9
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1167.5 1201 55.2
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1162.5 1017 62.8
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1151.0 1196 54.9
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1147.1 1156 55.4
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1147.1 1202 54.5
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1146.0 1196 53.8
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 0.0e+00 1140.9 1164 54.9
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1135.6 1193 54.3
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1132.9 1218 54.8
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 0.0e+00 1124.8 1190 53.4
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 0.0e+00 1092.8 1187 53.1
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1083.9 1249 50.1
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 1083.2 1212 53.4
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 0.0e+00 1077.0 1174 52.8
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 1.0e-310 1070.5 1171 52.6
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 3.8e-307 1058.5 1185 51.1
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 8.8e-304 1047.3 778 72.6
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 2.2e-302 1042.7 1178 51.4
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 1.7e-299 1033.1 1196 51.0
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 6.1e-297 1024.6 1122 52.0
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 9.7e-295 1017.3 1119 52.4
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 5.2e-288 995.0 1066 53.4
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 4.8e-286 988.4 1188 47.6
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 8.3e-286 987.6 1034 55.0
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 2.2e-278 963.0 730 70.8
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 2.9e-270 936.0 1254 46.3
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 7.5e-255 884.8 1168 46.1
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 5.2e-248 862.1 762 61.9
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 8.9e-248 861.3 1187 44.4
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 6.6e-243 845.1 1047 48.1
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 1.0e-227 794.7 971 47.9
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.8e-211 740.7 1198 42.2
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 1.4e-171 608.2 1208 36.4
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 3.7e-169 600.1 1165 35.5
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 1.9e-165 587.8 611 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.2e-154 552.0 1148 37.5
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 5.0e-150 536.6 1229 33.9
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 3.3e-133 480.7 636 48.9
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 5.1e-118 430.3 378 59.3
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 7.1e-112 409.8 392 56.4
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 9.7e-93 346.3 448 51.1
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.3e-81 309.3 518 38.4
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 5.2e-70 270.8 1297 26.4
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.2e-66 259.6 393 41.0
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.9e-41 175.3 214 47.2
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 2.6e-37 162.2 110 77.3
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 2.2e-36 159.1 291 38.1
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 3.2e-35 155.2 123 63.4
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 6.0e-34 151.0 259 41.3
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 3.9e-33 148.3 131 60.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 1.2e-31 143.3 142 57.0
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.1e-30 138.7 86 69.8
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.6e-26 126.3 96 58.3
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 1.1e-24 120.2 92 63.0
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 1.5e-24 119.8 109 56.0
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 5.2e-22 111.3 74 66.2
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.7e-20 106.3 81 60.5
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 4.0e-06 58.5 80 40.0
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 6.9e-06 57.8 74 41.9


User provided reference genes

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