Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G112500 Prunus persica HOM05D004091 ORTHO05D004581 6.8e-74 280.8 166 100.0
Prupe.6G112600 Prunus persica HOM05D004091 ORTHO05D004581 3.9e-37 158.7 111 75.7
MD03G1129100 Malus domestica HOM05D004091 ORTHO05D004581 4.8e-35 151.8 167 57.5
MD03G1127600 Malus domestica HOM05D004091 ORTHO05D004581 5.1e-29 131.7 162 55.6
RcHm_v2.0_Chr5g0056881 Rosa chinensis HOM05D004091 ORTHO05D004581 5.0e-24 115.2 174 53.4
MD03G1127500 Malus domestica HOM05D004091 ORTHO05D004581 1.9e-23 113.2 85 68.2
FvH4_3g30660 Fragaria vesca HOM05D004091 ORTHO05D004581 9.3e-23 110.9 171 51.5
RcHm_v2.0_Chr5g0056871 Rosa chinensis HOM05D004091 ORTHO05D004581 3.0e-21 105.9 175 50.3
FAN25G1486 Fragaria x ananassa HOM05D004091 ORTHO05D004581 8.7e-21 104.4 172 48.8
FAN16G2177 Fragaria x ananassa HOM05D004091 ORTHO05D004581 6.3e-19 98.2 163 44.8
FAN11G2030 Fragaria x ananassa HOM05D004091 ORTHO05D004581 1.0e-16 90.9 173 43.9
FvH4_3g30650 Fragaria vesca HOM05D004091 ORTHO05D004581 2.2e-16 89.7 175 45.1
Haze_16835 Corylus avellana HOM05D004091 ORTHO05D004581 5.5e-15 85.1 169 42.6
Ciclev10030052m.g Citrus clementina HOM05D004091 ORTHO05D004581 2.1e-14 83.2 154 40.9
Cfa001699 Carpinus fangiana HOM05D004091 ORTHO05D004581 2.7e-14 82.8 169 44.4
Thecc.09G298700 Theobroma cacao HOM05D004091 ORTHO05D004581 6.7e-13 78.2 168 41.7
GSVIVG01031466001 Vitis vinifera HOM05D004091 ORTHO05D004581 8.8e-13 77.8 153 37.9
TAR369G1011 Trochodendron aralioides HOM05D004091 ORTHO05D004581 5.7e-12 75.1 152 37.5
COL.COLO4_19192 Corchorus olitorius HOM05D004091 ORTHO05D004581 7.4e-12 74.7 167 41.9
Duzib170G1119 Durio zibethinus HOM05D004091 ORTHO05D004581 7.4e-12 74.7 161 43.5
Ciclev10029810m.g Citrus clementina HOM05D004091 ORTHO05D004581 2.8e-11 72.8 175 34.9
Ca_01707_v3 Cicer arietinum L. HOM05D004091 ORTHO05D004581 4.8e-11 72.0 148 36.5
Manes.11G152300 Manihot esculenta HOM05D004091 ORTHO05D004581 1.1e-10 70.9 165 41.8
TPR.G21029 Trifolium pratense HOM05D004091 ORTHO05D004581 1.1e-10 70.9 169 36.1
Sed0002152 Sechium edule HOM05D004091 ORTHO05D004581 1.8e-10 70.1 163 34.4
Ciclev10029784m.g Citrus clementina HOM05D004091 ORTHO05D004581 2.4e-10 69.7 154 38.3
Actinidia24146 Actinidia chinensis HOM05D004091 ORTHO05D004581 6.9e-10 68.2 165 43.0
CiPaw.11G059100 Carya illinoinensis HOM05D004091 ORTHO05D004581 6.9e-10 68.2 163 39.9
Medtr2g084280 Medicago truncatula HOM05D004091 ORTHO05D004581 1.5e-09 67.0 155 40.0
QL01p015070 Quercus lobata HOM05D004091 ORTHO05D004581 2.0e-09 66.6 166 44.0
CANSAT54G0269 Cannabis sativa HOM05D004091 ORTHO05D004581 3.4e-09 65.9 183 35.5
Lalb_Chr24g0394931 Lupinus albus HOM05D004091 ORTHO05D004581 3.4e-09 65.9 164 32.3
Lj3g0003103 Lotus japonicus HOM05D004091 ORTHO05D004581 5.9e-09 65.1 172 39.0
Dinv16219 Davidia involucrata HOM05D004091 ORTHO05D004581 7.7e-09 64.7 167 40.1
THA.LOC104800575 Tarenaya hassleriana HOM05D004091 ORTHO05D004581 2.2e-08 63.2 167 34.1
Potri.009G005600 Populus trichocarpa HOM05D004091 ORTHO05D004581 2.9e-08 62.8 161 43.5
Gohir.A09G088800 Gossypium hirsutum HOM05D004091 ORTHO05D004581 3.8e-08 62.4 152 42.1
Gohir.D05G088200 Gossypium hirsutum HOM05D004091 ORTHO05D004581 6.5e-08 61.6 160 37.5
Gorai.009G090400 Gossypium raimondii HOM05D004091 ORTHO05D004581 6.5e-08 61.6 160 37.5
TAR623G0825 Trochodendron aralioides HOM05D004091 ORTHO05D004581 6.5e-08 61.6 154 40.3
CARHR121010 Cardamine hirsuta HOM05D004091 ORTHO05D004581 8.5e-08 61.2 158 36.1
Gohir.A05G087000 Gossypium hirsutum HOM05D004091 ORTHO05D004581 8.5e-08 61.2 162 40.1
Actinidia07184 Actinidia chinensis HOM05D004091 ORTHO05D004581 1.4e-07 60.5 169 41.4
Lj3g0002714 Lotus japonicus HOM05D004091 ORTHO05D004581 1.9e-07 60.1 172 32.6
Gohir.D09G088575 Gossypium hirsutum HOM05D004091 ORTHO05D004581 2.5e-07 59.7 152 36.8
Gorai.006G105000 Gossypium raimondii HOM05D004091 ORTHO05D004581 2.5e-07 59.7 152 36.8
VMungo1080G0687 Vigna mungo HOM05D004091 ORTHO05D004581 3.2e-07 59.3 100 42.0
THA.LOC104826386 Tarenaya hassleriana HOM05D004091 ORTHO05D004581 5.5e-07 58.5 167 32.3
ClCG02G021600 Citrullus lanatus HOM05D004091 ORTHO05D004581 7.2e-07 58.2 171 35.1
Nn6g35225 Nelumbo nucifera HOM05D004091 ORTHO05D004581 7.2e-07 58.2 151 39.7
Nitab4.5_0001634g0060 Nicotiana tabacum HOM05D004091 ORTHO05D004581 9.4e-07 57.8 76 47.4
Thhalv10016957m.g Eutrema salsugineum HOM05D004091 ORTHO05D004581 1.6e-06 57.0 161 34.8
Nn2g13852 Nelumbo nucifera HOM05D004091 ORTHO05D004581 1.6e-06 57.0 155 34.2
Psat5g253480 Pisum sativum HOM05D004091 ORTHO05D004581 1.6e-06 57.0 150 30.0
Glyma.12G178500 Glycine max HOM05D004091 ORTHO05D004581 3.6e-06 55.8 170 32.4
Peaxi162Scf00490g00018 Petunia axillaris HOM05D004091 ORTHO05D004581 3.6e-06 55.8 63 49.2
Phvul.005G130500 Phaseolus vulgaris HOM05D004091 ORTHO05D004581 3.6e-06 55.8 102 39.2
TWI79G0102 Tripterygium wilfordii HOM05D004091 ORTHO05D004581 4.7e-06 55.5 166 38.6
TWI79G0199 Tripterygium wilfordii HOM05D004091 ORTHO05D004581 4.7e-06 55.5 166 38.6
Nitab4.5_0001897g0030 Nicotiana tabacum HOM05D004091 ORTHO05D004581 6.1e-06 55.1 107 41.1
Peaxi162Scf00530g00063 Petunia axillaris HOM05D004091 ORTHO05D004581 6.1e-06 55.1 63 50.8
Sabra09G0002900 Salix brachista HOM05D004091 ORTHO05D004581 6.1e-06 55.1 109 41.3
TPR.G36836 Trifolium pratense HOM05D004091 ORTHO05D004581 6.1e-06 55.1 169 33.7


User provided reference genes

Program Settings