Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.3e-64 249.6 128 100.0
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.6e-57 225.3 126 88.1
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.6e-57 225.3 125 90.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 5.8e-57 224.2 128 88.3
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.8e-57 224.2 125 87.2
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.2e-56 222.2 126 87.3
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.9e-56 221.9 125 88.0
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.9e-55 219.2 127 85.8
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.5e-55 218.8 126 85.7
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.5e-55 218.8 128 83.6
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.5e-55 218.8 127 85.0
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.2e-55 218.4 128 82.8
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 3.2e-55 218.4 128 82.8
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.2e-55 218.0 127 82.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 7.1e-55 217.2 128 82.8
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 9.3e-55 216.9 126 84.1
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 1.2e-54 216.5 128 82.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.1e-54 215.7 127 84.3
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.7e-54 215.3 128 82.8
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 2.7e-54 215.3 128 82.8
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 4.6e-54 214.5 128 84.4
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.6e-54 214.5 129 83.7
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.3e-53 213.0 128 83.6
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.8e-53 212.6 129 83.7
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.8e-53 212.6 125 82.4
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.3e-53 212.2 120 85.8
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 3.0e-53 211.8 130 83.1
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.0e-53 211.8 127 80.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.9e-53 211.5 127 79.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.1e-53 211.1 127 79.5
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.7e-53 210.7 123 84.6
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 8.7e-53 210.3 128 82.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.9e-52 209.1 126 83.3
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.3e-52 208.4 128 81.2
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 4.3e-52 208.0 127 80.3
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.4e-52 207.2 127 81.9
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 7.4e-52 207.2 126 82.5
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 9.6e-52 206.8 128 78.9
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 9.6e-52 206.8 127 81.1
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.1e-51 205.7 128 78.1
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 2.1e-51 205.7 127 80.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.7e-51 204.9 127 78.0
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.8e-51 204.5 118 85.6
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 8.2e-51 203.8 126 77.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.4e-50 203.0 128 78.1
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.4e-50 203.0 127 78.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 3.1e-50 201.8 123 79.7
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 9.0e-50 200.3 118 81.4
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 9.0e-50 200.3 128 78.1
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.2e-49 199.9 128 80.5
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.5e-49 199.5 121 78.5
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 2.0e-49 199.1 126 81.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 2.6e-49 198.7 124 80.6
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.6e-49 198.7 121 81.8
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.5e-49 198.0 119 81.5
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 4.5e-49 198.0 127 78.0
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 5.8e-49 197.6 121 78.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.0e-48 196.8 124 76.6
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.3e-48 196.4 119 79.0
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.7e-48 196.1 124 75.0
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 2.2e-48 195.7 119 77.3
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.9e-48 195.3 124 74.2
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 5.0e-48 194.5 124 74.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 5.0e-48 194.5 124 74.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 5.0e-48 194.5 124 74.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 6.5e-48 194.1 127 77.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 6.5e-48 194.1 124 73.4
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 6.5e-48 194.1 124 73.4
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 6.5e-48 194.1 120 78.3
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 8.4e-48 193.7 120 75.8
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 8.4e-48 193.7 127 76.4
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 8.4e-48 193.7 123 75.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 8.4e-48 193.7 126 75.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.1e-47 193.4 128 75.8
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.4e-47 193.0 119 77.3
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.9e-47 192.6 127 76.4
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.9e-47 192.6 119 79.0
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.5e-47 192.2 124 76.6
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 3.2e-47 191.8 121 77.7
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 4.2e-47 191.4 124 72.6
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.1e-47 190.7 122 76.2
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 7.1e-47 190.7 123 78.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.2e-46 189.9 116 77.6
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.6e-46 189.5 123 76.4
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 4.6e-46 188.0 116 75.9
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 6.1e-46 187.6 123 72.4
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.0e-45 186.8 114 78.1
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.3e-45 186.4 123 75.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.3e-45 185.7 127 73.2
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.3e-45 185.7 122 71.3
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.0e-45 185.3 122 71.3
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 3.9e-45 184.9 121 71.1
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 8.7e-45 183.7 117 71.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 8.7e-45 183.7 117 71.8
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 5.7e-44 181.0 117 74.4
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 7.4e-44 180.6 105 83.8
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.3e-43 179.9 108 79.6
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.3e-43 179.9 108 82.4
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.6e-43 179.5 117 70.1
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.2e-43 179.1 117 74.4
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.8e-42 176.0 98 88.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 2.4e-42 175.6 98 88.8
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.1e-42 175.3 121 72.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 3.1e-42 175.3 123 69.9
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 7.7e-41 170.6 104 76.0
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 7.7e-41 170.6 117 73.5
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.9e-40 168.7 119 73.1
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 3.8e-40 168.3 123 65.0
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.8e-40 168.3 110 77.3
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.9e-39 166.0 121 71.1
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.9e-39 166.0 122 68.0
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.2e-39 165.2 98 84.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.6e-38 162.9 99 82.8
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.3e-37 159.1 129 67.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.9e-37 158.3 100 75.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 6.7e-37 157.5 120 70.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.3e-36 154.8 90 81.1
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 4.3e-36 154.8 123 65.9
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 7.4e-36 154.1 121 63.6
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 2.2e-35 152.5 124 62.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.2e-35 152.5 121 63.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 3.7e-35 151.8 95 77.9
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-34 149.8 98 74.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.4e-34 149.8 98 74.5
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 5.3e-34 147.9 108 66.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.2e-33 146.7 87 78.2
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.3e-32 143.3 110 65.5
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.9e-32 142.1 86 81.4
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.9e-32 142.1 126 62.7
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 8.5e-32 140.6 83 78.3
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.5e-31 139.0 91 73.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 9.4e-31 137.1 100 69.0
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 1.0e-29 133.7 108 63.0
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.0e-29 133.7 102 67.6
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.0e-29 133.7 121 52.9
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.3e-27 126.7 98 59.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.1e-26 123.6 119 50.4
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.1e-26 123.6 113 51.3
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.4e-26 123.2 127 56.7
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 9.1e-26 120.6 86 72.1
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 2.0e-25 119.4 118 49.2
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 2.0e-25 119.4 116 53.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.7e-25 117.5 125 48.8
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.7e-24 116.3 113 49.6
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.9e-24 115.5 113 48.7
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 2.5e-23 112.5 115 47.8
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 3.2e-23 112.1 116 51.7
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.2e-23 112.1 118 50.8
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.2e-22 110.2 130 45.4
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.2e-22 110.2 76 80.3
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.2e-22 110.2 62 79.0
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 6.1e-22 107.8 129 45.0
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 6.1e-22 107.8 109 49.5
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.3e-19 100.1 61 80.3
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.0e-09 66.2 75 48.0
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 2.9e-08 62.4 59 44.1
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.0e-08 61.6 65 46.2
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 7.2e-07 57.8 111 36.0


User provided reference genes

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