Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 1.3e-54 216.1 105 100.0
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 1.3e-33 146.4 107 72.0
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 4.8e-33 144.4 107 70.1
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 4.8e-33 144.4 107 70.1
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 4.8e-33 144.4 107 70.1
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.8e-32 142.5 107 70.1
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 9.1e-32 140.2 107 71.0
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 7.2e-21 104.0 84 66.7
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 2.7e-20 102.1 84 65.5
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 1.4e-19 99.8 95 56.8
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.4e-19 99.8 107 51.4
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.4e-19 99.8 104 52.9
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 1.2e-18 96.7 101 48.5
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 3.4e-18 95.1 96 53.1
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 3.4e-18 95.1 106 51.9
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 4.4e-18 94.7 86 57.0
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 4.4e-18 94.7 106 52.8
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 5.7e-18 94.4 107 53.3
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 5.7e-18 94.4 104 54.8
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 7.5e-18 94.0 107 51.4
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 9.8e-18 93.6 108 50.9
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 1.7e-17 92.8 96 52.1
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 2.2e-17 92.4 111 46.8
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 6.3e-17 90.9 76 59.2
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 8.3e-17 90.5 82 61.0
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 8.3e-17 90.5 101 51.5
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.1e-16 90.1 97 56.7
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.1e-16 90.1 94 54.3
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 1.8e-16 89.4 106 45.3
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 2.4e-16 89.0 77 57.1
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.1e-16 88.2 100 52.0
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 4.1e-16 88.2 100 52.0
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 4.1e-16 88.2 97 50.5
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 5.4e-16 87.8 74 59.5
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 7.0e-16 87.4 100 49.0
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 9.1e-16 87.0 110 50.0
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 9.1e-16 87.0 104 49.0
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 2.0e-15 85.9 110 50.0
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 2.0e-15 85.9 103 52.4
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 3.5e-15 85.1 94 53.2
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 5.9e-15 84.3 106 45.3
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 5.9e-15 84.3 104 47.1
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.0e-14 83.6 86 55.8
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.0e-14 83.6 107 51.4
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.2e-14 82.4 110 48.2
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 2.9e-14 82.0 83 49.4
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 1.1e-13 80.1 105 47.6
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 1.5e-13 79.7 99 49.5
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 3.2e-13 78.6 99 42.4
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 7.2e-13 77.4 71 60.6
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 9.5e-13 77.0 95 48.4
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 1.6e-12 76.3 55 65.5
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 6.1e-12 74.3 91 47.3
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 6.1e-12 74.3 107 41.1
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 8.0e-12 73.9 63 52.4
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 8.0e-12 73.9 85 52.9
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 8.0e-12 73.9 98 42.9
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.4e-11 73.2 103 43.7
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 4.0e-11 71.6 63 50.8
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 6.8e-11 70.9 85 51.8
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 1.5e-10 69.7 101 45.5
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 7.5e-10 67.4 92 42.4
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 7.5e-10 67.4 56 55.4
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 9.8e-10 67.0 89 41.6
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 9.8e-10 67.0 95 38.9
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 1.3e-09 66.6 84 46.4
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 6.3e-09 64.3 60 55.0
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 1.8e-08 62.8 65 46.2
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 1.8e-08 62.8 56 50.0
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 4.1e-08 61.6 100 38.0
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 5.4e-08 61.2 55 50.9
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 5.4e-08 61.2 71 46.5
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 7.0e-08 60.8 109 38.5
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 9.2e-08 60.5 72 45.8
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 9.2e-08 60.5 78 50.0
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 1.2e-07 60.1 63 49.2
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.6e-07 59.7 96 43.8
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 2.0e-07 59.3 77 42.9
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 2.0e-07 59.3 103 37.9
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.0e-07 59.3 68 44.1
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 2.7e-07 58.9 63 47.6
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 3.5e-07 58.5 63 49.2
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 5.9e-07 57.8 72 44.4
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 7.7e-07 57.4 72 44.4
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 7.7e-07 57.4 72 44.4
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 7.7e-07 57.4 72 44.4
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 7.7e-07 57.4 72 44.4
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 7.7e-07 57.4 84 45.2
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 7.7e-07 57.4 95 43.2
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 1.7e-06 56.2 84 45.2
Thhalv10011102m.g Eutrema salsugineum HOM05D009695 ORTHO05D007271 1.7e-06 56.2 43 58.1
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 1.7e-06 56.2 92 39.1
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 2.3e-06 55.8 90 40.0
Nitab4.5_0000106g0370 Nicotiana tabacum HOM05D039995 ORTHO05D007271 2.3e-06 55.8 39 59.0
EL10Ac9g21645 Beta vulgaris HOM05D009695 ORTHO05D007271 2.9e-06 55.5 84 38.1
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 2.9e-06 55.5 81 39.5
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 3.8e-06 55.1 63 44.4
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 3.8e-06 55.1 64 46.9
CARHR164810 Cardamine hirsuta HOM05D009695 ORTHO05D007271 5.0e-06 54.7 102 36.3
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 5.0e-06 54.7 64 43.8
Zm00001eb419750 Zea mays HOM05D022601 ORTHO05D023448 6.6e-06 54.3 48 56.2
CARHR120770 Cardamine hirsuta HOM05D014739 ORTHO05D007271 8.6e-06 53.9 45 55.6
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 8.6e-06 53.9 63 46.0


User provided reference genes

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