Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 2.3e-116 423.3 216 100.0
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 2.4e-73 280.4 205 71.2
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-71 274.6 216 67.1
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 8.6e-71 271.9 216 66.7
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 2.5e-70 270.4 216 66.2
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 5.1e-55 219.5 222 54.5
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 6.6e-55 219.2 221 54.8
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 6.6e-55 219.2 222 54.1
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 8.6e-55 218.8 221 52.9
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.5e-51 208.0 212 54.2
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 2.0e-51 207.6 168 66.1
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 4.4e-51 206.5 210 52.4
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 5.8e-51 206.1 212 51.9
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 7.6e-51 205.7 217 50.2
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 4.2e-49 199.9 198 55.6
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.2e-48 198.4 221 48.9
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 3.0e-47 193.7 215 45.6
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 3.0e-47 193.7 206 54.9
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 1.1e-46 191.8 201 53.7
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.5e-46 190.7 213 50.7
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 7.3e-46 189.1 213 50.7
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 9.0e-44 182.2 212 46.2
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 2.4e-41 174.1 218 42.7
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 2.7e-40 170.6 190 45.8
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.5e-38 164.1 202 47.5
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 6.2e-37 159.5 211 43.6
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 6.2e-37 159.5 208 43.3
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.1e-36 158.7 218 42.7
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.1e-36 158.7 195 45.1
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 5.3e-36 156.4 220 41.8
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 6.9e-36 156.0 201 44.3
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.0e-35 154.5 221 41.2
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 2.0e-35 154.5 207 44.4
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 2.0e-35 154.5 205 43.4
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.6e-35 154.1 231 39.0
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 7.6e-35 152.5 216 44.4
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.7e-34 151.4 221 41.2
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 2.2e-34 151.0 216 38.0
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.9e-34 150.6 207 43.0
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 4.9e-34 149.8 180 42.2
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 6.4e-34 149.4 218 40.8
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.4e-33 148.3 219 43.4
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 6.0e-32 142.9 191 41.9
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.0e-32 142.9 223 39.0
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.3e-31 141.7 196 42.3
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.8e-31 141.4 219 40.6
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.8e-31 141.4 192 39.1
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 6.7e-31 139.4 210 40.0
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 8.7e-31 139.0 218 40.8
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.1e-30 138.7 167 45.5
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 3.3e-30 137.1 209 38.3
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 5.6e-30 136.3 232 37.9
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.1e-29 134.4 209 39.2
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 6.2e-29 132.9 197 41.1
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.4e-28 131.7 189 39.7
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.4e-28 131.7 207 37.2
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 2.4e-28 131.0 206 35.9
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.9e-28 129.4 171 39.8
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.2e-27 128.6 195 36.4
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.6e-27 127.5 216 33.8
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 3.4e-27 127.1 192 39.6
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 7.6e-27 125.9 222 38.7
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 7.6e-27 125.9 201 37.8
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.0e-26 125.6 201 37.8
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.3e-26 125.2 165 41.8
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.7e-26 124.8 195 38.5
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.7e-26 124.8 209 38.8
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.9e-26 123.2 169 36.1
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 8.4e-26 122.5 207 36.2
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.5e-25 120.9 189 38.1
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 5.5e-25 119.8 162 40.7
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.6e-24 118.2 195 34.4
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.6e-24 118.2 177 37.3
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.1e-24 117.9 216 32.9
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.0e-23 115.5 190 34.7
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.3e-23 115.2 195 36.4
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.3e-23 115.2 197 35.0
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 2.3e-23 114.4 106 56.6
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 2.3e-23 114.4 180 39.4
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.0e-23 114.0 195 36.4
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.0e-23 114.0 195 36.9
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.0e-23 114.0 116 46.6
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.5e-22 111.7 170 40.6
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.5e-22 111.7 218 34.4
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.5e-22 111.7 218 34.4
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.5e-22 111.7 121 41.3
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.3e-22 110.5 199 36.2
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 2.8e-21 107.5 171 35.1
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.7e-21 107.1 132 45.5
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.8e-21 106.7 148 37.2
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.8e-20 104.8 144 40.3
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.8e-20 104.8 179 37.4
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.8e-20 104.8 217 33.2
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 6.9e-20 102.8 171 36.3
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.2e-19 102.1 170 36.5
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.5e-19 101.7 205 32.2
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 2.0e-19 101.3 179 36.3
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 2.6e-19 100.9 154 39.0
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 3.4e-19 100.5 230 28.7
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 7.6e-19 99.4 180 38.3
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 7.6e-19 99.4 140 42.1
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 7.6e-19 99.4 220 30.0
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.3e-18 98.6 133 37.6
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.8e-18 97.1 174 33.9
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 3.8e-18 97.1 216 31.9
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.8e-18 97.1 175 33.7
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 5.0e-18 96.7 209 32.1
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 8.4e-18 95.9 147 37.4
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 8.4e-18 95.9 171 33.3
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 8.4e-18 95.9 219 33.8
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.4e-17 95.1 149 33.6
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 4.2e-17 93.6 157 29.9
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 2.1e-16 91.3 201 31.3
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 4.6e-16 90.1 192 33.3
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.0e-15 89.0 180 35.0
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.0e-15 89.0 117 35.0
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.8e-15 88.2 169 35.5
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.5e-14 84.3 191 27.7
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.3e-14 84.0 128 44.5
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 7.4e-14 82.8 162 34.0
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 9.7e-14 82.4 127 33.1
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 1.6e-13 81.6 173 35.3
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 3.7e-13 80.5 172 29.1
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 8.2e-13 79.3 59 57.6
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 1.1e-12 79.0 157 35.7
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.4e-12 78.6 158 31.6
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 1.8e-12 78.2 157 35.7
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.8e-12 78.2 185 29.7
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 2.4e-12 77.8 168 32.1
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.4e-12 77.8 99 37.4
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 4.1e-12 77.0 157 35.0
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 6.9e-12 76.3 155 35.5
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 6.9e-12 76.3 155 35.5
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 6.9e-12 76.3 209 31.6
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 9.0e-12 75.9 153 32.0
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.0e-11 74.7 158 31.6
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.0e-11 74.7 79 38.0
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.4e-11 73.9 158 31.6
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.3e-10 72.0 169 32.5
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.1e-09 68.9 177 29.4
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 3.9e-07 60.5 78 38.5
SEGI_04056 Sequoiadendron giganteum HOM05D004255 ORTHO05D004815 2.0e-06 58.2 172 27.9
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 2.5e-06 57.8 47 51.1
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 2.5e-06 57.8 100 30.0
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 5.7e-06 56.6 69 44.9
ECA238G3047 Erigeron canadensis HOM05D004255 ORTHO05D004815 9.7e-06 55.8 50 52.0


User provided reference genes

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