Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G105700 Prunus persica HOM05D001524 ORTHO05D001392 4.3e-36 154.1 75 100.0
PGSC0003DMG400025765 Solanum tuberosum HOM05D001524 ORTHO05D001392 2.4e-10 68.6 53 56.6
Ah.01g018320 Amaranthus hybridus HOM05D001524 ORTHO05D001392 3.1e-10 68.2 53 62.3
Oeu044279.1 Olea europaea HOM05D001524 ORTHO05D001392 3.1e-10 68.2 53 54.7
Aa31LG8G13040 Aethionema arabicum HOM05D001524 ORTHO05D001392 4.1e-10 67.8 51 58.8
Nitab4.5_0001143g0050 Nicotiana tabacum HOM05D001524 ORTHO05D001392 5.3e-10 67.4 53 58.5
Glyma.20G130000 Glycine max HOM05D001524 ORTHO05D001392 9.1e-10 66.6 69 47.8
Nitab4.5_0001143g0020 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.2e-09 66.2 53 56.6
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.2e-09 66.2 53 56.6
TWI79G1228 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 1.6e-09 65.9 51 60.8
Oeu044276.1 Olea europaea HOM05D001524 ORTHO05D001392 2.0e-09 65.5 53 50.9
Cfa004594 Carpinus fangiana HOM05D001524 ORTHO05D001392 2.7e-09 65.1 51 58.8
Gohir.D13G043100 Gossypium hirsutum HOM05D001524 ORTHO05D001392 2.7e-09 65.1 51 60.8
Gorai.013G047800 Gossypium raimondii HOM05D001524 ORTHO05D001392 2.7e-09 65.1 51 60.8
Gohir.A13G044000 Gossypium hirsutum HOM05D001524 ORTHO05D001392 3.5e-09 64.7 51 60.8
Prupe.8G136400 Prunus persica HOM05D001524 ORTHO05D001392 3.5e-09 64.7 69 46.4
Gohir.D13G042400 Gossypium hirsutum HOM05D001524 ORTHO05D001392 4.5e-09 64.3 51 60.8
Gorai.013G047600 Gossypium raimondii HOM05D001524 ORTHO05D001392 4.5e-09 64.3 51 60.8
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 4.5e-09 64.3 53 56.6
TWI75G0774 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 4.5e-09 64.3 51 60.8
Medtr1g107215 Medicago truncatula HOM05D001524 ORTHO05D001392 5.9e-09 63.9 51 56.9
GSVIVG01037910001 Vitis vinifera HOM05D001524 ORTHO05D001392 5.9e-09 63.9 49 61.2
Ciclev10029208m.g Citrus clementina HOM05D001524 ORTHO05D001392 7.7e-09 63.5 51 56.9
Prupe.8G136500 Prunus persica HOM05D001524 ORTHO05D001392 1.0e-08 63.2 51 58.8
Thecc.02G109400 Theobroma cacao HOM05D001524 ORTHO05D001392 1.0e-08 63.2 51 56.9
Zm00001eb044960 Zea mays HOM05D001524 ORTHO05D001392 1.0e-08 63.2 69 52.2
CiPaw.05G012400 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.3e-08 62.8 51 54.9
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 1.3e-08 62.8 69 44.9
Haze_10191 Corylus avellana HOM05D001524 ORTHO05D001392 1.3e-08 62.8 51 56.9
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 1.7e-08 62.4 53 54.7
MD10G1098800 Malus domestica HOM05D001524 ORTHO05D001392 1.7e-08 62.4 71 49.3
MD10G1147400 Malus domestica HOM05D001524 ORTHO05D001392 1.7e-08 62.4 71 49.3
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 1.7e-08 62.4 50 58.0
Glyma.16G214300 Glycine max HOM05D000005 ORTHO05D001392 2.2e-08 62.0 51 52.9
Thecc.02G109700 Theobroma cacao HOM05D001524 ORTHO05D001392 2.2e-08 62.0 51 56.9
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 2.9e-08 61.6 53 52.8
Prupe.8G136200 Prunus persica HOM05D001524 ORTHO05D001392 2.9e-08 61.6 71 46.5
Eucgr.G01336 Eucalyptus grandis HOM05D001524 ORTHO05D001392 3.8e-08 61.2 69 46.4
Eucgr.H03202 Eucalyptus grandis HOM05D001524 ORTHO05D001392 3.8e-08 61.2 69 46.4
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 3.8e-08 61.2 51 51.0
PGR042G2205 Punica granatum HOM05D001524 ORTHO05D001392 3.8e-08 61.2 51 52.9
RcHm_v2.0_Chr6g0254801 Rosa chinensis HOM05D001524 ORTHO05D001392 3.8e-08 61.2 46 63.0
VMungo0720G2936 Vigna mungo HOM05D001524 ORTHO05D001392 3.8e-08 61.2 51 52.9
Atru.chr5.2505 Acer truncatum HOM05D001524 ORTHO05D001392 5.0e-08 60.8 51 51.0
CARHR105610 Cardamine hirsuta HOM05D001524 ORTHO05D001392 5.0e-08 60.8 51 54.9
DCAR_021980 Daucus carota HOM05D001524 ORTHO05D001392 5.0e-08 60.8 53 54.7
Duzib248G0849 Durio zibethinus HOM05D001524 ORTHO05D001392 5.0e-08 60.8 51 54.9
Solyc01g107540.4 Solanum lycopersicum HOM05D001524 ORTHO05D001392 5.0e-08 60.8 53 50.9
AL3G46920 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 6.5e-08 60.5 51 56.9
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 6.5e-08 60.5 50 56.0
Actinidia00405 Actinidia chinensis HOM05D001524 ORTHO05D001392 8.5e-08 60.1 49 59.2
Cpa.g.sc106.102 Carica papaya HOM05D001524 ORTHO05D001392 8.5e-08 60.1 49 59.2
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 8.5e-08 60.1 69 43.5
MD05G1090800 Malus domestica HOM05D001524 ORTHO05D001392 8.5e-08 60.1 71 47.9
Phvul.007G040900 Phaseolus vulgaris HOM05D001524 ORTHO05D001392 8.5e-08 60.1 51 52.9
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 8.5e-08 60.1 50 56.0
AT2G15220 Arabidopsis thaliana HOM05D001524 ORTHO05D001392 1.1e-07 59.7 51 54.9
AUR62010320 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.1e-07 59.7 53 52.8
Eucgr.G01330 Eucalyptus grandis HOM05D001524 ORTHO05D001392 1.1e-07 59.7 51 54.9
Eucgr.H03199 Eucalyptus grandis HOM05D001524 ORTHO05D001392 1.1e-07 59.7 51 54.9
Thhalv10022994m.g Eutrema salsugineum HOM05D001524 ORTHO05D001392 1.1e-07 59.7 53 52.8
FvH4_2g05010 Fragaria vesca HOM05D001524 ORTHO05D001392 1.1e-07 59.7 69 44.9
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 1.1e-07 59.7 51 51.0
Rhsim11G0158900 Rhododendron simsii HOM05D001524 ORTHO05D001392 1.1e-07 59.7 53 54.7
Rhsim11G0159100 Rhododendron simsii HOM05D001524 ORTHO05D001392 1.1e-07 59.7 49 55.1
SEGI_23215 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.1e-07 59.7 51 58.8
TPR.G3271 Trifolium pratense HOM05D001524 ORTHO05D001392 1.1e-07 59.7 51 54.9
Ciclev10030248m.g Citrus clementina HOM05D001524 ORTHO05D001392 1.5e-07 59.3 51 52.9
Cc03_g14200 Coffea canephora HOM05D001524 ORTHO05D001392 1.5e-07 59.3 53 49.1
Lj9C324T3 Lonicera japonica HOM05D001524 ORTHO05D001392 1.5e-07 59.3 53 54.7
Peaxi162Scf00016g02429 Petunia axillaris HOM05D001524 ORTHO05D001392 1.5e-07 59.3 51 52.9
BcaC01g03070 Brassica carinata HOM05D001524 ORTHO05D001392 1.9e-07 58.9 53 50.9
C03p56330 Brassica napus HOM05D001524 ORTHO05D001392 1.9e-07 58.9 53 50.9
BolC3t17923H Brassica oleracea HOM05D001524 ORTHO05D001392 1.9e-07 58.9 53 50.9
CANSAT25G1469 Cannabis sativa HOM05D001524 ORTHO05D001392 1.9e-07 58.9 51 52.9
CANSAT25G2328 Cannabis sativa HOM05D001524 ORTHO05D001392 1.9e-07 58.9 51 52.9
Haze_10192 Corylus avellana HOM05D001524 ORTHO05D001392 1.9e-07 58.9 49 55.1
Eucgr.H02706 Eucalyptus grandis HOM05D001524 ORTHO05D001392 1.9e-07 58.9 51 52.9
QL11p033337 Quercus lobata HOM05D001524 ORTHO05D001392 1.9e-07 58.9 49 55.1
Sp3g28460 Schrenkiella parvula HOM05D001524 ORTHO05D001392 1.9e-07 58.9 51 54.9
TAR628G1720 Trochodendron aralioides HOM05D001524 ORTHO05D001392 1.9e-07 58.9 49 57.1
COL.COLO4_32581 Corchorus olitorius HOM05D001524 ORTHO05D001392 2.5e-07 58.5 69 44.9
Glyma.16G214200 Glycine max HOM05D000005 ORTHO05D001392 2.5e-07 58.5 51 51.0
Oeu037254.1 Olea europaea HOM05D001524 ORTHO05D001392 2.5e-07 58.5 47 55.3
Rhsim11G0158800 Rhododendron simsii HOM05D001524 ORTHO05D001392 2.5e-07 58.5 53 52.8
Sopen01g049740 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-07 58.5 53 49.1
AL3G46910 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 3.2e-07 58.2 53 50.9
CARHR105570 Cardamine hirsuta HOM05D001524 ORTHO05D001392 3.2e-07 58.2 51 52.9
CiPaw.05G012800 Carya illinoinensis HOM05D001524 ORTHO05D001392 3.2e-07 58.2 51 51.0
Thhalv10022957m.g Eutrema salsugineum HOM05D001524 ORTHO05D001392 3.2e-07 58.2 53 50.9
Rhsim11G0159000 Rhododendron simsii HOM05D001524 ORTHO05D001392 3.2e-07 58.2 49 53.1
THA.LOC104819552 Tarenaya hassleriana HOM05D001524 ORTHO05D001392 3.2e-07 58.2 51 49.0
vmacro01997 Vaccinium macrocarpon HOM05D001524 ORTHO05D001392 3.2e-07 58.2 53 52.8
Atru.chr5.2479 Acer truncatum HOM05D001524 ORTHO05D001392 4.2e-07 57.8 51 51.0
BcaB08g34583 Brassica carinata HOM05D001524 ORTHO05D001392 4.2e-07 57.8 53 49.1
A03p45390 Brassica napus HOM05D001524 ORTHO05D001392 4.2e-07 57.8 53 49.1
BraA03t13671Z Brassica rapa HOM05D001524 ORTHO05D001392 4.2e-07 57.8 53 49.1
CiPaw.05G012500 Carya illinoinensis HOM05D001524 ORTHO05D001392 4.2e-07 57.8 49 55.1
Lalb_Chr12g0210281 Lupinus albus HOM05D001524 ORTHO05D001392 4.2e-07 57.8 51 52.9
QL11p033248 Quercus lobata HOM05D001524 ORTHO05D001392 4.2e-07 57.8 49 55.1
Sopen01g030680 Solanum pennellii HOM05D001524 ORTHO05D001392 4.2e-07 57.8 53 49.1
Glyma.20G129900 Glycine max HOM05D001524 ORTHO05D001392 5.5e-07 57.4 51 51.0
Nn1g04674 Nelumbo nucifera HOM05D001524 ORTHO05D001392 5.5e-07 57.4 51 52.9
PSO675G6294 Papaver somniferum HOM05D001524 ORTHO05D001392 5.5e-07 57.4 51 54.9
Solyc01g080800.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 5.5e-07 57.4 50 50.0
TAR628G1028 Trochodendron aralioides HOM05D001524 ORTHO05D001392 5.5e-07 57.4 49 59.2
Carub.0003s2906 Capsella rubella HOM05D001524 ORTHO05D001392 7.2e-07 57.0 51 49.0
Eucgr.G01341 Eucalyptus grandis HOM05D001524 ORTHO05D001392 7.2e-07 57.0 51 51.0
Phvul.007G041000 Phaseolus vulgaris HOM05D001524 ORTHO05D001392 7.2e-07 57.0 51 49.0
RcHm_v2.0_Chr6g0254831 Rosa chinensis HOM05D001524 ORTHO05D001392 7.2e-07 57.0 73 39.7
Atru.chr5.2485 Acer truncatum HOM05D001524 ORTHO05D001392 9.4e-07 56.6 52 51.9
Atru.chr5.2558 Acer truncatum HOM05D001524 ORTHO05D001392 9.4e-07 56.6 51 49.0
Cfa021156 Carpinus fangiana HOM05D001524 ORTHO05D001392 9.4e-07 56.6 49 53.1
Lj9P323T45 Lonicera japonica HOM05D001524 ORTHO05D001392 9.4e-07 56.6 69 43.5
VMungo0720G2083 Vigna mungo HOM05D001524 ORTHO05D001392 9.4e-07 56.6 69 43.5
Dinv42199 Davidia involucrata HOM05D001524 ORTHO05D001392 1.2e-06 56.2 51 52.9
HanXRQChr03g0068671 Helianthus annuus HOM05D001524 ORTHO05D001392 1.2e-06 56.2 53 49.1
SEGI_18471 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.2e-06 56.2 51 56.9
Cfa004595 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.6e-06 55.8 49 53.1
CiPaw.05G012600 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.6e-06 55.8 49 55.1
Haze_10193 Corylus avellana HOM05D001524 ORTHO05D001392 1.6e-06 55.8 49 53.1
Hma1.2p1_0796F.1_g219300 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 1.6e-06 55.8 51 49.0
MBI13_g09222_MAGBIO Magnolia biondii HOM05D001524 ORTHO05D001392 1.6e-06 55.8 69 40.6
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 1.6e-06 55.8 51 47.1
Potri.001G299500 Populus trichocarpa HOM05D001524 ORTHO05D001392 1.6e-06 55.8 51 49.0
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.6e-06 55.8 69 44.9
Zm00001eb221080 Zea mays HOM05D001524 ORTHO05D001392 1.6e-06 55.8 52 53.8
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 2.1e-06 55.5 54 51.9
Dinv15771 Davidia involucrata HOM05D001524 ORTHO05D001392 2.1e-06 55.5 51 52.9
FAN15G0751 Fragaria x ananassa HOM05D001524 ORTHO05D001392 2.1e-06 55.5 51 51.0
QL11p033208 Quercus lobata HOM05D001524 ORTHO05D001392 2.1e-06 55.5 49 53.1
SalBow6G1183 Salvia bowleyana HOM05D001524 ORTHO05D001392 2.1e-06 55.5 52 50.0
Eucgr.H03203 Eucalyptus grandis HOM05D001524 ORTHO05D001392 2.7e-06 55.1 51 49.0
Lalb_Chr21g0308301 Lupinus albus HOM05D001524 ORTHO05D001392 2.7e-06 55.1 51 47.1
Psat6g217560 Pisum sativum HOM05D001524 ORTHO05D001392 2.7e-06 55.1 51 47.1
QL11p033339 Quercus lobata HOM05D001524 ORTHO05D001392 2.7e-06 55.1 69 40.6
CSS0050176 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 3.6e-06 54.7 50 52.0
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 3.6e-06 54.7 53 47.2
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 3.6e-06 54.7 51 51.0
Manes.07G071148 Manihot esculenta HOM05D001524 ORTHO05D001392 3.6e-06 54.7 51 49.0
SEGI_23136 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 3.6e-06 54.7 51 52.9
SGA_v2.0_scaffold13G06615 Striga asiatica HOM05D001524 ORTHO05D001392 3.6e-06 54.7 53 50.9
C07p08690 Brassica napus HOM05D001524 ORTHO05D001392 4.7e-06 54.3 51 45.1
BolC7t41280H Brassica oleracea HOM05D001524 ORTHO05D001392 4.7e-06 54.3 51 45.1
Eucgr.G01338 Eucalyptus grandis HOM05D001524 ORTHO05D001392 4.7e-06 54.3 51 51.0
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 4.7e-06 54.3 53 47.2
Prupe.8G136100 Prunus persica HOM05D001524 ORTHO05D001392 4.7e-06 54.3 71 40.8
SEGI_31003 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 4.7e-06 54.3 69 43.5
SEGI_34363 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 4.7e-06 54.3 69 43.5
Solyc03g013110.2 Solanum lycopersicum HOM05D001524 ORTHO05D001392 4.7e-06 54.3 47 48.9
BcaC06g36037 Brassica carinata HOM05D001524 ORTHO05D001392 6.1e-06 53.9 48 47.9
Migut.N01159 Erythranthe guttata HOM05D001524 ORTHO05D001392 6.1e-06 53.9 53 45.3
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 6.1e-06 53.9 53 45.3
Hma1.2p1_0796F.1_g219310 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 6.1e-06 53.9 53 49.1
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 6.1e-06 53.9 53 47.2
Manes.07G071764 Manihot esculenta HOM05D001524 ORTHO05D001392 6.1e-06 53.9 51 49.0
Os10g0490900 Oryza sativa ssp. japonica HOM05D001524 ORTHO05D001392 6.1e-06 53.9 69 40.6
Sabra09G0073000 Salix brachista HOM05D001524 ORTHO05D001392 6.1e-06 53.9 51 47.1
Cfa004593 Carpinus fangiana HOM05D001524 ORTHO05D001392 8.0e-06 53.5 49 49.0
Lsat_1_v5_gn_9_112561 Lactuca sativa HOM05D001524 ORTHO05D001392 8.0e-06 53.5 53 45.3


User provided reference genes

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