Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.2e-69 265.0 137 100.0
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.5e-45 185.7 131 71.8
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.2e-44 183.3 131 71.0
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.1e-44 182.6 131 71.0
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.7e-44 182.2 131 71.0
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-44 182.2 131 71.0
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.0e-43 180.3 131 69.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.1e-42 176.8 131 69.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 5.3e-40 167.9 131 67.9
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 6.1e-36 154.5 130 60.0
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 3.0e-35 152.1 135 59.3
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 6.7e-35 151.0 132 60.6
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 6.3e-33 144.4 132 61.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 6.3e-33 144.4 136 58.8
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 9.1e-32 140.6 128 57.0
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 2.0e-31 139.4 137 54.0
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.5e-31 138.3 133 55.6
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.0e-30 137.1 120 58.3
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.2e-30 136.0 129 55.0
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 3.8e-30 135.2 123 54.5
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.8e-30 135.2 133 59.4
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 3.8e-30 135.2 124 59.7
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 6.5e-30 134.4 133 53.4
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.1e-29 133.7 126 54.8
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.4e-29 133.3 132 54.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.2e-29 132.1 133 58.6
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.2e-28 130.2 121 58.7
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.2e-28 130.2 129 51.9
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-28 130.2 133 57.9
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.7e-28 128.3 130 50.8
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 6.1e-28 127.9 129 55.0
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 6.1e-28 127.9 132 53.0
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.4e-27 126.7 132 54.5
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.8e-27 126.3 133 51.9
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.8e-27 126.3 122 54.9
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.3e-27 125.9 141 50.4
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 3.0e-27 125.6 128 53.1
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 3.9e-27 125.2 133 52.6
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 5.2e-27 124.8 128 53.9
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.2e-27 124.8 134 50.7
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 8.8e-27 124.0 130 53.1
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.5e-26 123.2 136 52.2
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.5e-26 123.2 131 51.1
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 2.0e-26 122.9 125 52.0
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.6e-26 122.5 134 53.0
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.6e-26 122.5 138 50.7
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 3.3e-26 122.1 128 49.2
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.4e-26 121.7 136 50.0
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.7e-26 121.3 133 55.6
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 7.4e-26 120.9 118 51.7
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 7.4e-26 120.9 133 51.9
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 1.3e-25 120.2 139 51.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.3e-25 120.2 118 51.7
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.3e-25 120.2 138 49.3
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.7e-25 119.8 137 51.1
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.7e-25 118.6 143 48.3
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 4.8e-25 118.2 142 47.9
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.3e-25 117.9 140 52.9
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.4e-24 115.9 132 47.7
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 7.0e-24 114.4 130 50.0
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 2.0e-23 112.8 121 53.7
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 2.0e-23 112.8 150 44.0
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 2.6e-23 112.5 150 44.0
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.5e-23 112.1 138 44.9
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.5e-23 112.1 133 45.9
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.5e-23 111.7 133 52.6
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.7e-22 109.8 140 45.7
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.7e-22 109.8 139 41.7
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.2e-22 109.4 121 50.4
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.9e-22 109.0 127 45.7
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 6.5e-22 107.8 140 46.4
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.1e-21 107.1 133 46.6
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.5e-21 106.7 108 55.6
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 8.0e-20 100.9 150 40.0
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.0e-19 99.0 120 50.0
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 4.0e-19 98.6 128 45.3
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.2e-19 98.2 104 51.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.5e-18 96.7 131 41.2
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.5e-18 96.7 105 51.4
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.0e-18 96.3 137 43.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 2.6e-18 95.9 106 55.7
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.6e-18 95.9 137 43.8
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 3.4e-18 95.5 139 39.6
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.4e-18 95.5 141 41.8
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.7e-18 94.0 113 51.3
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.7e-17 93.2 137 38.7
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.7e-17 93.2 114 50.0
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.7e-17 92.0 133 42.1
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 3.7e-17 92.0 140 39.3
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.8e-17 91.7 113 50.4
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 3.1e-16 89.0 136 36.8
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.1e-16 88.6 128 40.6
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 4.1e-16 88.6 133 40.6
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 4.1e-16 88.6 111 50.5
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 4.1e-16 88.6 130 39.2
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 5.3e-16 88.2 136 36.8
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 7.0e-16 87.8 108 49.1
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 7.0e-16 87.8 111 48.6
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 9.1e-16 87.4 107 48.6
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 9.1e-16 87.4 107 48.6
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.6e-15 86.7 128 39.8
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.7e-15 85.9 110 50.9
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 5.9e-15 84.7 107 44.9
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.9e-15 84.7 105 50.5
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.0e-14 84.0 107 48.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.7e-14 83.2 116 46.6
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.2e-14 82.8 106 46.2
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.2e-14 82.8 106 46.2
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 2.9e-14 82.4 110 46.4
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.9e-14 82.4 147 38.8
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 3.8e-14 82.0 107 43.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 5.0e-14 81.6 106 46.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 6.5e-14 81.3 106 48.1
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 6.5e-14 81.3 106 48.1
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 8.5e-14 80.9 106 47.2
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.1e-13 80.5 119 44.5
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.1e-13 80.5 128 42.2
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 5.5e-13 78.2 130 40.8
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.2e-12 77.0 118 45.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.6e-12 76.6 129 36.4
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.4e-11 73.6 112 42.0
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 5.2e-11 71.6 130 34.6
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 6.8e-11 71.2 142 35.2
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-10 70.5 138 34.1
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 1.5e-10 70.1 140 34.3
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 4.4e-10 68.6 133 34.6
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 4.4e-10 68.6 141 35.5
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.7e-09 66.6 136 35.3
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.7e-09 66.6 136 35.3
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 2.2e-09 66.2 74 47.3
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 2.8e-09 65.9 138 33.3
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 1.8e-08 63.2 131 34.4
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 1.8e-08 63.2 144 32.6
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 4.1e-08 62.0 137 32.1
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.2e-07 60.5 128 33.6
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 1.6e-07 60.1 128 32.8
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 3.5e-07 58.9 137 33.6
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 5.9e-07 58.2 128 32.8
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 7.7e-07 57.8 136 30.9


User provided reference genes

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