Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 7.0e-50 200.3 100 100.0
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 1.2e-36 156.4 101 82.2
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 2.9e-35 151.8 101 79.2
Prupe.6G096000 Prunus persica HOM05D007887 ORTHO05D009725 2.7e-33 145.2 81 88.9
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 2.0e-28 129.0 101 71.3
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 6.4e-27 124.0 100 70.0
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 9.3e-26 120.2 100 68.0
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.2e-25 119.8 102 68.6
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 2.1e-25 119.0 102 68.6
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 2.7e-25 118.6 102 68.6
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.3e-24 116.3 102 67.6
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 1.3e-24 116.3 100 64.0
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 3.0e-24 115.2 101 68.3
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 3.9e-24 114.8 100 65.0
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 6.6e-24 114.0 100 65.0
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 2.5e-23 112.1 104 63.5
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 5.6e-23 110.9 106 65.1
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 1.6e-22 109.4 100 65.0
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 1.7e-19 99.4 100 59.0
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 2.4e-18 95.5 102 53.9
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 1.6e-17 92.8 88 59.1
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 2.1e-17 92.4 100 55.0
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 3.0e-16 88.6 105 54.3
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 1.5e-15 86.3 101 52.5
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 9.6e-15 83.6 100 53.0
Psat7g222640 Pisum sativum HOM05D007887 ORTHO05D009725 6.2e-14 80.9 105 53.3
Gohir.A13G220700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 8.1e-14 80.5 101 52.5
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 1.4e-13 79.7 101 51.5
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 5.3e-13 77.8 101 50.5
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 1.5e-12 76.3 101 50.5
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 2.6e-12 75.5 98 51.0
Ciclev10029602m.g Citrus clementina HOM05D007887 ORTHO05D009725 7.6e-12 73.9 43 83.7
COL.COLO4_05193 Corchorus olitorius HOM05D007887 ORTHO05D009725 1.3e-11 73.2 72 65.3
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 2.2e-11 72.4 101 46.5
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 2.9e-11 72.0 101 46.5
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 4.9e-11 71.2 101 45.5
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 1.1e-10 70.1 101 45.5
Phvul.011G072900 Phaseolus vulgaris HOM05D007887 ORTHO05D009725 3.2e-10 68.6 106 48.1
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 4.2e-10 68.2 117 43.6
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 9.3e-10 67.0 103 44.7
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 1.2e-09 66.6 95 44.2
arahy.Tifrunner.gnm1.ann1.ZKT7Q5 Arachis hypogaea HOM05D007887 ORTHO05D009725 1.6e-09 66.2 62 61.3
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 1.6e-09 66.2 104 48.1
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 3.5e-09 65.1 95 43.2
Gorai.004G013000 Gossypium raimondii HOM05D038922 ORTHO05D036122 3.5e-09 65.1 98 43.9
Lj3g0011826 Lotus japonicus HOM05D007887 ORTHO05D009725 3.5e-09 65.1 107 47.7
Gohir.D08G018500 Gossypium hirsutum HOM05D038922 ORTHO05D036122 4.6e-09 64.7 87 44.8
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 6.0e-09 64.3 102 45.1
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 6.0e-09 64.3 93 41.9
arahy.Tifrunner.gnm1.ann1.QG78WL Arachis hypogaea HOM05D007887 ORTHO05D009725 1.0e-08 63.5 62 58.1
Eucgr.J00947 Eucalyptus grandis HOM05D007887 ORTHO05D009725 1.0e-08 63.5 105 47.6
arahy.Tifrunner.gnm1.ann1.VU6S4B Arachis hypogaea HOM05D007887 ORTHO05D009725 1.3e-08 63.2 75 54.7
Gorai.013G255500 Gossypium raimondii HOM05D037992 ORTHO05D009725 1.3e-08 63.2 101 46.5
Lj3g0000190 Lotus japonicus HOM05D007887 ORTHO05D009725 1.3e-08 63.2 109 46.8
arahy.Tifrunner.gnm1.ann1.5EA918 Arachis hypogaea HOM05D007887 ORTHO05D009725 1.8e-08 62.8 75 53.3
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 3.0e-08 62.0 95 43.2
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 6.7e-08 60.8 100 43.0
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 6.7e-08 60.8 97 41.2
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 6.7e-08 60.8 100 43.0
Gohir.D13G224700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 6.7e-08 60.8 101 45.5
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 6.7e-08 60.8 105 43.8
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 8.7e-08 60.5 100 44.0
Aa31LG1G12450 Aethionema arabicum HOM05D007887 ORTHO05D009725 1.1e-07 60.1 96 43.8
Sp6g21990 Schrenkiella parvula HOM05D007887 ORTHO05D009725 1.9e-07 59.3 101 43.6
arahy.Tifrunner.gnm1.ann1.N776CK Arachis hypogaea HOM05D007887 ORTHO05D009725 2.5e-07 58.9 125 42.4
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 2.5e-07 58.9 100 43.0
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 2.5e-07 58.9 100 42.0
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 2.5e-07 58.9 100 42.0
Gohir.A08G008500 Gossypium hirsutum HOM05D038922 ORTHO05D036122 2.5e-07 58.9 87 41.4
HanXRQChr13g0404441 Helianthus annuus HOM05D007887 ORTHO05D009725 2.5e-07 58.9 57 49.1
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 5.7e-07 57.8 96 44.8
Ca_01431_v3 Cicer arietinum L. HOM05D007887 ORTHO05D009725 5.7e-07 57.8 94 44.7
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 7.4e-07 57.4 96 43.8
PGSC0003DMG400008069 Solanum tuberosum HOM05D023935 ORTHO05D009725 7.4e-07 57.4 98 45.9
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 1.3e-06 56.6 98 41.8
Glyma.13G328200 Glycine max HOM05D007887 ORTHO05D009725 1.3e-06 56.6 102 41.2
QL01p037342 Quercus lobata HOM05D000003 ORTHO05D011877 2.1e-06 55.8 44 70.5
Sopen11g027840 Solanum pennellii HOM05D023935 ORTHO05D009725 2.1e-06 55.8 99 46.5
ClCG02G021000 Citrullus lanatus HOM05D031230 ORTHO05D028893 2.8e-06 55.5 100 43.0
TPR.G11627 Trifolium pratense HOM05D007887 ORTHO05D009725 2.8e-06 55.5 114 43.9
Solyc11g069115.1 Solanum lycopersicum HOM05D023935 ORTHO05D009725 3.7e-06 55.1 98 42.9
Thhalv10015113m.g Eutrema salsugineum HOM05D007887 ORTHO05D009725 4.8e-06 54.7 98 43.9
Solyc11g069110.2 Solanum lycopersicum HOM05D023935 ORTHO05D009725 6.2e-06 54.3 98 42.9
DCAR_017079 Daucus carota HOM05D007887 ORTHO05D009725 8.2e-06 53.9 47 61.7


User provided reference genes

Program Settings