Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.3e-231 804.7 403 100.0
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 1.6e-193 679.5 410 84.9
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.6e-161 573.2 399 72.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 5.4e-157 558.1 409 71.1
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.6e-153 545.4 389 73.0
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.4e-149 531.6 406 67.7
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.5e-146 523.5 398 67.3
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 4.7e-145 518.5 369 69.1
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.0e-144 517.3 384 68.5
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.4e-144 516.9 409 67.0
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 4.0e-144 515.4 380 68.7
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.0e-144 515.4 393 66.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 4.0e-144 515.4 393 66.7
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 6.8e-144 514.6 421 64.8
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.7e-142 510.0 406 65.0
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.9e-141 506.5 393 66.4
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 9.2e-141 504.2 413 64.2
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 6.0e-140 501.5 380 66.8
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.7e-139 500.0 423 61.7
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 6.6e-139 498.0 398 64.3
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.1e-138 497.3 401 64.8
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 4.3e-138 495.4 409 62.8
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 2.1e-137 493.0 401 63.3
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 3.6e-137 492.3 401 63.1
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 6.2e-137 491.5 395 64.6
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.1e-136 490.7 415 62.4
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 6.8e-136 488.0 401 62.3
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.4e-135 485.3 411 60.8
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 4.4e-135 485.3 365 66.0
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.8e-135 485.0 368 64.9
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 2.9e-134 482.6 409 62.1
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 6.4e-134 481.5 369 65.0
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.1e-133 480.7 383 63.7
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 5.4e-133 478.4 402 62.7
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 7.1e-133 478.0 377 65.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 3.0e-131 472.6 403 62.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.1e-130 470.7 385 62.9
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 3.3e-130 469.2 403 58.3
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 9.5e-130 467.6 396 60.6
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 4.7e-129 465.3 375 63.5
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 6.2e-129 464.9 399 62.2
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 8.1e-129 464.5 368 65.8
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 2.0e-127 459.9 367 63.8
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 2.6e-127 459.5 398 63.8
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 5.8e-127 458.4 371 66.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 4.9e-126 455.3 385 60.8
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 8.4e-126 454.5 373 60.3
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 9.2e-125 451.1 402 59.0
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.2e-124 450.7 414 58.9
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.7e-124 449.5 346 65.3
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.3e-122 442.2 397 59.4
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 7.3e-122 441.4 397 56.7
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 4.7e-121 438.7 415 57.6
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 6.9e-120 434.9 399 58.4
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.2e-119 434.1 373 60.9
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 2.0e-119 433.3 396 58.1
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 2.6e-119 433.0 358 64.2
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 3.4e-119 432.6 400 56.5
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 4.4e-119 432.2 399 56.4
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.4e-119 432.2 310 73.5
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 9.9e-119 431.0 380 59.5
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 6.4e-118 428.3 366 59.0
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 2.1e-116 423.3 396 57.1
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 3.5e-116 422.5 294 68.4
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.6e-116 422.2 268 75.0
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 2.3e-115 419.9 350 64.6
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 3.0e-115 419.5 404 57.2
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 6.6e-115 418.3 414 53.6
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 8.7e-115 417.9 422 53.3
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 9.6e-114 414.5 417 53.7
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 9.6e-114 414.5 378 58.5
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.3e-113 414.1 410 54.1
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 3.6e-113 412.5 404 54.2
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.1e-112 411.0 410 53.4
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 5.3e-112 408.7 462 51.7
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.5e-111 407.1 408 52.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 4.5e-111 405.6 421 51.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 5.8e-111 405.2 417 53.2
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 7.6e-111 404.8 406 53.4
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 7.6e-111 404.8 378 55.8
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 1.3e-110 404.1 407 53.8
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 4.9e-110 402.1 375 56.5
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 3.2e-109 399.4 421 52.0
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.3e-106 389.4 388 56.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.3e-106 389.4 379 57.5
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.3e-104 382.1 379 55.4
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 5.3e-104 382.1 397 52.1
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 9.0e-104 381.3 401 50.4
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 9.9e-103 377.9 252 73.8
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 9.9e-103 377.9 308 65.9
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.3e-102 377.5 404 51.7
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.1e-101 374.4 405 50.1
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 3.2e-101 372.9 381 54.9
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 5.5e-101 372.1 282 66.7
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.3e-99 367.5 358 52.0
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.3e-99 367.5 362 53.9
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 1.5e-98 364.0 229 72.5
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 7.4e-98 361.7 365 54.0
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 4.8e-97 359.0 367 49.6
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 6.9e-96 355.1 373 55.8
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.5e-95 354.0 360 54.7
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.3e-94 350.9 365 49.0
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.1e-93 347.8 384 48.2
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 3.9e-91 339.3 397 48.1
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.4e-87 326.2 266 57.1
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 2.9e-86 323.2 291 54.6
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 2.9e-86 323.2 299 52.8
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 6.5e-86 322.0 364 48.9
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.4e-85 320.9 394 45.7
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.8e-83 313.9 279 53.8
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 2.2e-81 307.0 306 50.0
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 9.1e-80 301.6 317 54.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 7.7e-79 298.5 353 47.9
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.4e-77 294.3 181 72.9
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.9e-77 293.9 188 73.4
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 2.3e-75 287.0 314 48.7
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 1.1e-74 284.6 191 70.2
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 6.3e-73 278.9 368 42.9
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 2.9e-62 243.4 275 42.9
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 6.5e-62 242.3 247 58.7
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.7e-60 236.9 179 59.8
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.4e-56 224.6 134 73.1
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.7e-46 191.0 111 78.4
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.5e-45 188.0 226 46.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.5e-45 188.0 211 52.6
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 1.9e-45 187.6 111 76.6
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.5e-45 187.2 111 78.4
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.8e-44 183.7 244 50.8
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 5.0e-38 162.9 100 81.0
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 4.7e-36 156.4 112 64.3
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.7e-33 146.7 122 58.2
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.9e-30 136.7 108 59.3
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 9.5e-29 132.1 85 70.6
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.8e-27 127.9 101 57.4
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 5.2e-27 126.3 174 50.6
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.7e-25 121.3 101 52.5
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.0e-22 112.1 89 61.8
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.4e-19 101.7 85 47.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.4e-18 97.1 77 61.0
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 2.4e-16 90.9 140 51.4
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 1.1e-11 75.5 42 83.3
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 9.9e-10 68.9 147 43.5
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 4.9e-09 66.6 142 43.7
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.1e-07 61.2 43 60.5


User provided reference genes

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