Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 2.0e-86 322.4 164 100.0
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 1.4e-71 273.1 161 85.7
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 2.6e-70 268.9 164 82.3
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.5e-70 268.1 161 82.6
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.5e-68 262.3 161 82.6
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 2.6e-57 225.7 162 69.8
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.4e-57 225.3 159 71.7
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 3.4e-57 225.3 159 71.7
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 3.4e-57 225.3 164 68.9
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 3.1e-55 218.8 158 69.6
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 7.0e-55 217.6 165 66.1
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 9.1e-55 217.2 162 69.8
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 2.0e-54 216.1 159 69.2
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 2.7e-54 215.7 166 65.7
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 2.7e-54 215.7 164 63.4
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 1.3e-53 213.4 164 66.5
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 8.6e-53 210.7 161 67.7
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 1.1e-52 210.3 158 67.7
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 4.2e-52 208.4 161 66.5
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 1.2e-51 206.8 161 67.1
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 1.2e-51 206.8 144 72.2
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 1.6e-51 206.5 160 66.2
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 1.8e-50 203.0 162 64.8
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 6.8e-50 201.1 158 64.6
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 6.8e-50 201.1 162 66.0
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 8.9e-50 200.7 157 68.2
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.2e-49 200.3 146 71.2
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 1.2e-49 200.3 163 60.7
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 1.5e-49 199.9 160 61.2
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 1.5e-49 199.9 161 63.4
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 2.6e-49 199.1 149 65.8
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 3.4e-49 198.7 156 62.2
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 3.4e-49 198.7 168 64.3
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 4.4e-49 198.4 146 70.5
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 1.3e-48 196.8 145 66.2
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.7e-48 196.4 115 84.3
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 2.2e-48 196.1 161 62.7
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 2.2e-48 196.1 141 71.6
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 3.7e-48 195.3 154 64.3
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.9e-48 194.9 161 60.2
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 6.3e-48 194.5 152 61.8
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 6.3e-48 194.5 162 64.8
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 8.3e-48 194.1 156 64.7
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 1.1e-47 193.7 157 63.7
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.8e-47 193.0 159 62.9
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 2.4e-47 192.6 149 65.8
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 3.1e-47 192.2 165 58.2
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 4.1e-47 191.8 162 62.3
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 5.4e-47 191.4 164 59.8
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 9.2e-47 190.7 159 62.3
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 9.2e-47 190.7 140 67.9
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 9.2e-47 190.7 166 55.4
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.2e-46 190.3 155 61.3
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.6e-46 189.9 155 59.4
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 1.6e-46 189.9 164 57.3
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 2.7e-46 189.1 155 60.6
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 2.7e-46 189.1 141 63.8
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 3.5e-46 188.7 154 58.4
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 4.5e-46 188.3 155 60.0
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 4.5e-46 188.3 137 67.9
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 4.5e-46 188.3 159 61.6
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 1.3e-45 186.8 155 60.0
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 1.3e-45 186.8 154 59.1
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.7e-45 186.4 152 57.9
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.9e-45 185.7 155 59.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 3.8e-45 185.3 160 58.8
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 5.0e-45 184.9 161 58.4
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 6.6e-45 184.5 156 59.6
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 6.6e-45 184.5 156 64.7
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 6.6e-45 184.5 158 60.8
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 6.6e-45 184.5 156 59.6
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 8.6e-45 184.1 164 56.7
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 1.1e-44 183.7 155 58.7
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 1.5e-44 183.3 143 61.5
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 2.5e-44 182.6 154 57.1
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 4.3e-44 181.8 134 66.4
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 4.3e-44 181.8 156 59.6
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 5.6e-44 181.4 162 55.6
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 7.3e-44 181.0 144 60.4
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 9.5e-44 180.6 144 60.4
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 1.2e-43 180.3 139 64.0
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 1.6e-43 179.9 154 57.8
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.1e-43 179.5 154 57.8
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 2.8e-43 179.1 156 57.1
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 2.8e-43 179.1 144 59.7
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.6e-43 178.7 162 55.6
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 8.0e-43 177.6 146 61.6
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 8.0e-43 177.6 162 54.3
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.0e-42 177.2 136 64.7
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 1.4e-42 176.8 134 61.9
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 4.0e-42 175.3 170 53.5
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 6.8e-42 174.5 156 55.8
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 7.5e-41 171.0 140 58.6
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 2.2e-40 169.5 149 59.7
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 6.4e-40 167.9 158 53.8
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 1.8e-39 166.4 145 60.0
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 3.2e-39 165.6 137 58.4
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 2.7e-38 162.5 146 55.5
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 2.7e-38 162.5 160 54.4
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 2.7e-38 162.5 118 63.6
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 6.0e-38 161.4 139 58.3
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 1.3e-37 160.2 136 59.6
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 1.7e-37 159.8 126 61.1
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 1.5e-36 156.8 124 65.3
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 2.5e-36 156.0 147 53.7
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 9.5e-36 154.1 137 55.5
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.8e-34 149.8 162 51.2
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 2.0e-33 146.4 130 53.1
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 2.2e-32 142.9 152 47.4
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 1.1e-31 140.6 108 60.2
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 3.0e-29 132.5 141 50.4
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.5e-28 130.2 157 44.6
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 1.9e-28 129.8 139 43.9
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 9.5e-28 127.5 136 42.6
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 2.6e-25 119.4 89 69.7
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 4.4e-25 118.6 77 71.4
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 7.5e-25 117.9 138 45.7
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.1e-23 114.0 142 41.5
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 7.1e-23 111.3 90 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.0e-21 107.5 191 34.0
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 8.6e-21 104.4 105 50.5
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 5.6e-20 101.7 89 56.2
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 2.8e-19 99.4 151 39.7
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 4.7e-19 98.6 154 37.0
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 1.3e-16 90.5 143 34.3
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 2.4e-15 86.3 63 63.5
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 3.0e-13 79.3 65 58.5
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 8.7e-13 77.8 103 42.7
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 4.7e-11 72.0 76 46.1
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 2.0e-09 66.6 41 65.9
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 8.4e-08 61.2 56 57.1
Medtr5g087980 Medicago truncatula HOM05D000678 ORTHO05D002523 6.0e-06 55.1 113 31.0


User provided reference genes

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