Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G090000 Prunus persica HOM05D008454 ORTHO05D010339 3.2e-78 295.0 154 100.0
MD11G1119900 Malus domestica HOM05D008454 ORTHO05D010339 4.4e-43 178.3 157 66.9
FAN21G2608 Fragaria x ananassa HOM05D017620 ORTHO05D010339 2.1e-24 116.3 97 62.9
FAN16G2582 Fragaria x ananassa HOM05D017620 ORTHO05D010339 3.5e-24 115.5 147 49.7
RcHm_v2.0_Chr5g0061801 Rosa chinensis HOM05D017620 ORTHO05D010339 3.5e-24 115.5 105 62.9
arahy.Tifrunner.gnm1.ann1.06S5B0 Arachis hypogaea HOM05D008454 ORTHO05D010339 3.8e-18 95.5 144 43.1
arahy.Tifrunner.gnm1.ann1.DB83L5 Arachis hypogaea HOM05D008454 ORTHO05D010339 3.8e-18 95.5 144 43.1
CiPaw.13G103800 Carya illinoinensis HOM05D008454 ORTHO05D010339 6.4e-18 94.7 152 44.1
QL01p035454 Quercus lobata HOM05D008454 ORTHO05D010339 8.4e-18 94.4 150 44.7
Haze_23972 Corylus avellana HOM05D008454 ORTHO05D010339 1.1e-17 94.0 153 46.4
Duzib168G1836 Durio zibethinus HOM05D008454 ORTHO05D010339 7.1e-17 91.3 103 54.4
VMungo1127G1552 Vigna mungo HOM05D008454 ORTHO05D010339 9.3e-17 90.9 142 49.3
Thecc.09G334800 Theobroma cacao HOM05D008454 ORTHO05D010339 2.1e-16 89.7 103 54.4
Cfa011401 Carpinus fangiana HOM05D008454 ORTHO05D010339 2.7e-16 89.4 146 46.6
Lj3g0021113 Lotus japonicus HOM05D008454 ORTHO05D010339 2.7e-16 89.4 144 46.5
Glyma.11G147735 Glycine max HOM05D008454 ORTHO05D010339 3.5e-16 89.0 147 44.9
Ca_19220_v3 Cicer arietinum L. HOM05D000134 ORTHO05D002886 6.0e-16 88.2 131 43.5
Psat7g221640 Pisum sativum HOM05D008454 ORTHO05D010339 7.9e-16 87.8 149 38.9
COL.COLO4_18399 Corchorus olitorius HOM05D008454 ORTHO05D010339 1.0e-15 87.4 88 55.7
Dinv06346 Davidia involucrata HOM05D008454 ORTHO05D010339 1.0e-15 87.4 95 51.6
Gorai.001G105700 Gossypium raimondii HOM05D008454 ORTHO05D010339 1.7e-15 86.7 111 47.7
Gohir.A07G093700 Gossypium hirsutum HOM05D008454 ORTHO05D010339 6.6e-15 84.7 110 47.3
Gohir.D07G098350 Gossypium hirsutum HOM05D008454 ORTHO05D010339 8.7e-15 84.3 74 58.1
Actinidia00800 Actinidia chinensis HOM05D008454 ORTHO05D010339 1.5e-14 83.6 103 49.5
TPR.G2967 Trifolium pratense HOM05D008454 ORTHO05D010339 1.5e-14 83.6 143 42.0
Phvul.011G070400 Phaseolus vulgaris HOM05D008454 ORTHO05D010339 7.3e-14 81.3 142 46.5
Medtr4g061580 Medicago truncatula HOM05D008454 ORTHO05D010339 6.2e-13 78.2 140 37.9
TWI31G0064 Tripterygium wilfordii HOM05D008454 ORTHO05D010339 9.0e-12 74.3 113 45.1
Potri.009G093700 Populus trichocarpa HOM05D008454 ORTHO05D010339 2.0e-11 73.2 104 43.3
Atru.chr3.3753 Acer truncatum HOM05D008454 ORTHO05D010339 2.6e-11 72.8 108 49.1
Hma1.2p1_0861F.1_g229610 Hydrangea macrophylla HOM05D008454 ORTHO05D010339 2.6e-11 72.8 140 37.9
Sc12g0000230 Simmondsia chinensis HOM05D008454 ORTHO05D010339 1.4e-09 67.0 149 36.2
Cpa.g.sc139.21 Carica papaya HOM05D008454 ORTHO05D010339 1.9e-09 66.6 79 51.9
Nn2g10582 Nelumbo nucifera HOM05D008454 ORTHO05D010339 4.2e-09 65.5 102 35.3
THA.LOC104800629 Tarenaya hassleriana HOM05D008454 ORTHO05D010339 7.1e-09 64.7 85 41.2
ClCG02G020710 Citrullus lanatus HOM05D029394 ORTHO05D010339 7.9e-08 61.2 147 33.3
Lsat_1_v5_gn_8_76400 Lactuca sativa HOM05D036695 ORTHO05D010339 1.0e-07 60.8 83 43.4
CANSAT54G3023 Cannabis sativa HOM05D008454 ORTHO05D010339 1.8e-07 60.1 123 37.4
Aa31LG5G7630 Aethionema arabicum HOM05D008454 ORTHO05D010339 5.1e-07 58.5 84 41.7
AT1G07860 Arabidopsis thaliana HOM05D008454 ORTHO05D010339 8.7e-07 57.8 98 40.8
AL1G18140 Arabidopsis lyrata HOM05D008454 ORTHO05D010339 1.1e-06 57.4 78 46.2
Sed0002130 Sechium edule HOM05D029394 ORTHO05D010339 1.9e-06 56.6 141 38.3
AT1G07870 Arabidopsis thaliana HOM05D000134 ORTHO05D000168 2.5e-06 56.2 81 44.4
Carub.0001s0720 Capsella rubella HOM05D008454 ORTHO05D010339 2.5e-06 56.2 77 45.5
Gohir.D03G132550 Gossypium hirsutum HOM05D008454 ORTHO05D010339 2.5e-06 56.2 75 44.0
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.3e-06 55.8 84 41.7
SalBow3G1011 Salvia bowleyana HOM05D008454 ORTHO05D010339 3.3e-06 55.8 95 36.8
Sp1g06540 Schrenkiella parvula HOM05D008454 ORTHO05D010339 3.3e-06 55.8 68 41.2
FvH4_3g34151 Fragaria vesca HOM05D017620 ORTHO05D035329 4.3e-06 55.5 92 40.2
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.6e-06 55.1 84 40.5
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.6e-06 55.1 84 41.7
C08p03410 Brassica napus HOM05D000134 ORTHO05D000168 7.4e-06 54.7 76 40.8
BolC8t47139H Brassica oleracea HOM05D008454 ORTHO05D010339 7.4e-06 54.7 76 40.8
Lalb_Chr01g0003961 Lupinus albus HOM05D008454 ORTHO05D010339 7.4e-06 54.7 46 58.7
MSTRG.18616 Avicennia marina HOM05D008454 ORTHO05D010339 9.6e-06 54.3 57 49.1


User provided reference genes

Program Settings