Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G088100 Prunus persica HOM05D000932 ORTHO05D000729 4.1e-117 424.9 231 100.0
MD03G1105500 Malus domestica HOM05D000932 ORTHO05D000729 1.0e-51 207.6 216 61.6
MD11G1118000 Malus domestica HOM05D000932 ORTHO05D000729 1.1e-48 197.6 212 61.3
RcHm_v2.0_Chr5g0062181 Rosa chinensis HOM05D000932 ORTHO05D000729 5.8e-39 165.2 253 49.8
FAN25G0417 Fragaria x ananassa HOM05D000932 ORTHO05D000729 5.4e-29 132.1 141 61.0
FAN16G0142 Fragaria x ananassa HOM05D000932 ORTHO05D000729 7.1e-29 131.7 141 60.3
FAN11G1095 Fragaria x ananassa HOM05D000932 ORTHO05D000729 9.3e-29 131.3 141 60.3
FAN21G3891 Fragaria x ananassa HOM05D000932 ORTHO05D000729 3.5e-28 129.4 222 46.4
CANSAT54G2797 Cannabis sativa HOM05D000932 ORTHO05D000729 2.2e-22 110.2 212 42.5
Medtr2g096080 Medicago truncatula HOM05D000932 ORTHO05D000729 7.9e-20 101.7 232 39.2
VMungo1127G0752 Vigna mungo HOM05D000932 ORTHO05D000729 7.9e-20 101.7 242 37.2
Lalb_Chr03g0026971 Lupinus albus HOM05D000932 ORTHO05D000729 1.0e-19 101.3 164 48.2
Duzib168G1389 Durio zibethinus HOM05D000932 ORTHO05D000729 1.3e-19 100.9 237 39.2
Phvul.011G069800 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.3e-19 100.9 242 37.6
COL.COLO4_18415 Corchorus olitorius HOM05D000932 ORTHO05D000729 2.3e-19 100.1 174 39.7
Haze_23997 Corylus avellana HOM05D000932 ORTHO05D000729 2.3e-19 100.1 232 39.2
Medtr4g061823 Medicago truncatula HOM05D000932 ORTHO05D000729 3.0e-19 99.8 165 44.8
Medtr4g061910 Medicago truncatula HOM05D000932 ORTHO05D000729 3.0e-19 99.8 165 44.8
Glyma.15G219800 Glycine max HOM05D000932 ORTHO05D000729 1.5e-18 97.4 228 39.5
VMungo1080G1675 Vigna mungo HOM05D000932 ORTHO05D000729 1.9e-18 97.1 183 43.2
Cfa011417 Carpinus fangiana HOM05D000932 ORTHO05D000729 4.3e-18 95.9 226 39.8
Ciclev10029153m.g Citrus clementina HOM05D000932 ORTHO05D000729 5.6e-18 95.5 223 39.0
Glyma.11G146690 Glycine max HOM05D000932 ORTHO05D000729 7.4e-18 95.1 202 37.6
Manes.11G137200 Manihot esculenta HOM05D000932 ORTHO05D000729 7.4e-18 95.1 215 39.5
Thecc.09G331400 Theobroma cacao HOM05D000932 ORTHO05D000729 7.4e-18 95.1 239 38.1
Rhsim01G0223700 Rhododendron simsii HOM05D000932 ORTHO05D000729 9.6e-18 94.7 172 45.3
QL01p034599 Quercus lobata HOM05D000932 ORTHO05D000729 1.3e-17 94.4 235 37.4
TPR.G11573 Trifolium pratense HOM05D000932 ORTHO05D000729 1.3e-17 94.4 183 41.5
Ca_01362_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 2.1e-17 93.6 163 45.4
TWI31G1196 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 2.8e-17 93.2 204 41.7
Phvul.L002465 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 8.2e-17 91.7 156 45.5
Psat5g282000 Pisum sativum HOM05D000932 ORTHO05D000729 8.2e-17 91.7 183 40.4
Glyma.13G331000 Glycine max HOM05D000932 ORTHO05D000729 1.1e-16 91.3 157 45.9
Actinidia00809 Actinidia chinensis HOM05D000932 ORTHO05D000729 1.4e-16 90.9 218 39.0
Lj3g0021931 Lotus japonicus HOM05D000932 ORTHO05D000729 1.8e-16 90.5 167 44.3
Actinidia03768 Actinidia chinensis HOM05D000932 ORTHO05D000729 2.4e-16 90.1 155 45.2
Duzib170G0631 Durio zibethinus HOM05D000932 ORTHO05D000729 4.0e-16 89.4 137 45.3
Glyma.12G074400 Glycine max HOM05D000932 ORTHO05D000729 4.0e-16 89.4 185 38.9
PGR119G1900 Punica granatum HOM05D000932 ORTHO05D000729 5.3e-16 89.0 174 40.2
Psat7g221360 Pisum sativum HOM05D000932 ORTHO05D000729 1.2e-15 87.8 142 45.8
vmacro14497 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 1.5e-15 87.4 218 39.9
Atru.chr3.3781 Acer truncatum HOM05D000932 ORTHO05D000729 2.0e-15 87.0 146 42.5
Potri.001G233600 Populus trichocarpa HOM05D000932 ORTHO05D000729 2.6e-15 86.7 166 41.0
Eucgr.J02104 Eucalyptus grandis HOM05D000932 ORTHO05D000729 5.8e-15 85.5 141 45.4
CiPaw.13G102500 Carya illinoinensis HOM05D000932 ORTHO05D000729 1.3e-14 84.3 164 52.4
Solyc11g072850.2 Solanum lycopersicum HOM05D000932 ORTHO05D000729 2.2e-14 83.6 174 41.4
Lj3g0019030 Lotus japonicus HOM05D000932 ORTHO05D000729 3.8e-14 82.8 187 38.5
CAN.G971.7 Capsicum annuum HOM05D000932 ORTHO05D000729 4.9e-14 82.4 164 43.9
Oeu062310.1 Olea europaea HOM05D000932 ORTHO05D000729 6.5e-14 82.0 199 37.7
TWI75G0146 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 6.5e-14 82.0 225 38.2
arahy.Tifrunner.gnm1.ann1.KU7VJQ Arachis hypogaea HOM05D000932 ORTHO05D000729 8.4e-14 81.6 178 39.3
arahy.Tifrunner.gnm1.ann1.AE0X9Y Arachis hypogaea HOM05D000932 ORTHO05D000729 1.1e-13 81.3 170 40.6
Dinv06294 Davidia involucrata HOM05D000932 ORTHO05D000729 1.1e-13 81.3 193 37.3
Thhalv10014534m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 1.4e-13 80.9 181 37.0
Oeu040996.1 Olea europaea HOM05D000932 ORTHO05D000729 1.4e-13 80.9 204 38.2
CsaV3_1G033810 Cucumis sativus L. HOM05D000932 ORTHO05D000729 1.9e-13 80.5 173 39.9
Hma1.2p1_0035F.1_g021790 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 1.9e-13 80.5 158 43.7
Peaxi162Scf00836g00322 Petunia axillaris HOM05D000932 ORTHO05D000729 2.5e-13 80.1 203 38.4
Hund05021 Selenicereus undatus HOM05D000932 ORTHO05D000729 2.5e-13 80.1 215 35.3
Lj2A1045T49 Lonicera japonica HOM05D000932 ORTHO05D000729 4.2e-13 79.3 174 40.8
arahy.Tifrunner.gnm1.ann1.IR754M Arachis hypogaea HOM05D000932 ORTHO05D000729 5.5e-13 79.0 198 35.9
AT5G59990 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 7.1e-13 78.6 148 40.5
Gorai.001G106600 Gossypium raimondii HOM05D000932 ORTHO05D000729 7.1e-13 78.6 213 37.1
arahy.Tifrunner.gnm1.ann1.3QBB6E Arachis hypogaea HOM05D000932 ORTHO05D000729 9.3e-13 78.2 189 38.1
Carub.0008s2069 Capsella rubella HOM05D000932 ORTHO05D000729 9.3e-13 78.2 202 35.6
MELO3C020684.2 Cucumis melo HOM05D000932 ORTHO05D000729 1.2e-12 77.8 172 40.1
Gohir.D03G131400 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.2e-12 77.8 182 39.6
Gorai.003G138200 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.2e-12 77.8 182 39.6
Nitab4.5_0009199g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.6e-12 77.4 216 35.6
AL8G36560 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 2.1e-12 77.0 148 39.9
ClCG03G001780 Citrullus lanatus HOM05D000932 ORTHO05D000729 2.7e-12 76.6 199 37.7
FvH4_3g34540 Fragaria vesca HOM05D000932 ORTHO05D000729 2.7e-12 76.6 46 87.0
Gohir.D07G098900 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.7e-12 76.6 189 37.6
AUR62009650 Chenopodium quinoa HOM05D000932 ORTHO05D000729 3.5e-12 76.3 194 39.2
Ah.15g096310 Amaranthus hybridus HOM05D000932 ORTHO05D000729 6.0e-12 75.5 212 35.8
Gohir.A05G099300 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.8e-11 73.9 161 41.0
BcaB05g22601 Brassica carinata HOM05D000932 ORTHO05D000729 2.3e-11 73.6 177 37.3
C02p11960 Brassica napus HOM05D000932 ORTHO05D000729 2.3e-11 73.6 148 39.9
BraA02t05749Z Brassica rapa HOM05D000932 ORTHO05D000729 2.3e-11 73.6 148 39.9
Gohir.A07G094600 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.3e-11 73.6 189 37.6
Gohir.A03G036900 Gossypium hirsutum HOM05D000932 ORTHO05D000729 3.0e-11 73.2 146 40.4
Gohir.D05G099200 Gossypium hirsutum HOM05D000932 ORTHO05D000729 3.0e-11 73.2 195 39.0
GSVIVG01025065001 Vitis vinifera HOM05D000932 ORTHO05D000729 3.9e-11 72.8 160 40.6
EL10Ac7g15936 Beta vulgaris HOM05D000932 ORTHO05D000729 6.7e-11 72.0 217 35.0
BolC2t07295H Brassica oleracea HOM05D000932 ORTHO05D000729 6.7e-11 72.0 154 39.0
Nitab4.5_0008854g0010 Nicotiana tabacum HOM05D000932 ORTHO05D000729 6.7e-11 72.0 134 38.8
A02p06670 Brassica napus HOM05D000932 ORTHO05D000729 1.1e-10 71.2 177 35.0
BcaC04g19654 Brassica carinata HOM05D000932 ORTHO05D000729 1.5e-10 70.9 150 38.7
C09p52490 Brassica napus HOM05D000932 ORTHO05D000729 1.5e-10 70.9 150 38.7
BolC9t58116H Brassica oleracea HOM05D000932 ORTHO05D000729 1.5e-10 70.9 150 38.7
Sp6g21660 Schrenkiella parvula HOM05D000932 ORTHO05D000729 1.5e-10 70.9 144 38.9
Lsat_1_v5_gn_9_21300 Lactuca sativa HOM05D000932 ORTHO05D000729 4.3e-10 69.3 205 35.1
PGSC0003DMG400015524 Solanum tuberosum HOM05D000932 ORTHO05D000729 5.7e-10 68.9 111 44.1
Gorai.009G103100 Gossypium raimondii HOM05D000932 ORTHO05D000729 7.4e-10 68.6 218 35.3
Sopen11g030520 Solanum pennellii HOM05D000932 ORTHO05D000729 7.4e-10 68.6 111 44.1
BcaB08g36204 Brassica carinata HOM05D000932 ORTHO05D000729 1.3e-09 67.8 150 38.0
CARHR273630 Cardamine hirsuta HOM05D000932 ORTHO05D000729 1.3e-09 67.8 119 40.3
A10p17200 Brassica napus HOM05D000932 ORTHO05D000729 2.2e-09 67.0 150 37.3
arahy.Tifrunner.gnm1.ann1.ICH4NU Arachis hypogaea HOM05D000932 ORTHO05D000729 3.7e-09 66.2 86 47.7
Ah.08g215020 Amaranthus hybridus HOM05D000932 ORTHO05D000729 8.2e-09 65.1 217 34.1
MSTRG.21165 Avicennia marina HOM05D000932 ORTHO05D000729 8.2e-09 65.1 180 44.4
Nitab4.5_0009445g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 8.2e-09 65.1 216 35.2
SHI05990 Sapria himalayana HOM05D000932 ORTHO05D000729 8.2e-09 65.1 173 35.3
Cc01_g12030 Coffea canephora HOM05D000932 ORTHO05D000729 1.4e-08 64.3 158 36.7
TAR623G0516 Trochodendron aralioides HOM05D000932 ORTHO05D000729 1.4e-08 64.3 167 38.3
BraA10t43801Z Brassica rapa HOM05D000932 ORTHO05D000729 5.3e-08 62.4 137 37.2
HanXRQChr08g0230561 Helianthus annuus HOM05D000932 ORTHO05D000729 2.0e-07 60.5 186 33.3
Lalb_Chr24g0394321 Lupinus albus HOM05D000932 ORTHO05D000729 2.6e-07 60.1 200 30.0
THA.LOC104799467 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 1.3e-06 57.8 185 34.1
DCAR_005294 Daucus carota HOM05D000932 ORTHO05D000729 1.7e-06 57.4 144 45.8
Sed0019895 Sechium edule HOM05D000932 ORTHO05D000729 1.7e-06 57.4 146 37.7
ECA247G3745 Erigeron canadensis HOM05D000932 ORTHO05D000476 3.8e-06 56.2 162 37.7
Cc08_g15020 Coffea canephora HOM05D000932 ORTHO05D000729 5.0e-06 55.8 171 31.0


User provided reference genes

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