Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 0.0e+00 1206.4 622 100.0
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 3.2e-265 918.3 618 76.4
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.5e-211 738.4 704 59.2
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 4.9e-210 734.9 708 58.8
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 2.7e-200 702.6 705 57.2
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.0e-199 699.1 668 58.8
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.5e-198 696.0 705 56.3
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.3e-197 693.7 705 56.2
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.5e-187 660.2 659 57.1
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.1e-172 610.9 626 55.1
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.8e-165 586.3 627 53.3
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 3.8e-162 575.9 582 56.0
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.6e-155 553.9 582 54.3
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 8.6e-154 548.1 628 50.5
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 7.8e-147 525.0 716 45.7
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 5.2e-143 512.3 727 44.3
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.1e-140 504.6 707 45.1
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 2.7e-139 500.0 767 43.0
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 3.5e-139 499.6 706 45.5
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 7.8e-139 498.4 595 50.1
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 6.6e-138 495.4 631 47.2
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 2.1e-136 490.3 632 47.5
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 3.6e-136 489.6 622 49.4
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 6.8e-135 485.3 609 46.0
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.6e-131 474.2 723 43.0
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 1.6e-131 474.2 629 45.3
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.2e-126 458.0 486 50.8
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.4e-124 451.1 710 40.6
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 9.2e-124 448.4 671 43.4
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 2.0e-118 430.6 604 45.2
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 6.4e-117 425.6 616 42.7
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 5.4e-116 422.5 702 39.3
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 8.7e-114 415.2 461 51.8
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 7.3e-113 412.1 591 43.3
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 6.9e-111 405.6 631 41.8
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 2.0e-110 404.1 635 41.1
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 2.0e-110 404.1 683 40.1
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.4e-108 397.9 709 39.9
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 3.2e-108 396.7 698 38.8
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.6e-107 394.4 737 36.9
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.3e-106 391.3 623 41.7
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 1.8e-106 391.0 652 41.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 2.3e-106 390.6 709 38.4
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 3.0e-106 390.2 662 38.4
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 1.5e-105 387.9 669 37.7
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 3.3e-105 386.7 327 56.9
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 3.3e-105 386.7 721 38.6
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 3.3e-105 386.7 737 37.7
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 7.4e-105 385.6 598 42.3
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 2.1e-104 384.0 743 38.5
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 1.1e-103 381.7 653 40.0
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 1.4e-103 381.3 739 36.7
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.4e-103 381.3 297 65.0
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.4e-103 380.6 522 44.4
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 5.3e-103 379.4 475 47.6
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 6.9e-103 379.0 644 40.2
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 9.0e-103 378.6 327 55.4
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.2e-102 378.3 754 36.6
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 5.8e-102 375.9 636 39.9
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 7.6e-102 375.6 535 43.9
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.3e-101 374.8 296 61.1
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 1.7e-101 374.4 662 39.7
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 2.9e-101 373.6 651 40.2
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.4e-100 370.5 702 37.2
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 1.6e-99 367.9 669 38.6
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 2.7e-99 367.1 645 38.9
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 3.3e-97 360.1 517 42.9
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 3.3e-97 360.1 650 38.6
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 4.3e-97 359.8 505 44.8
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.3e-96 358.2 659 38.2
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 1.3e-96 358.2 383 50.4
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.1e-96 357.5 638 38.7
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 8.2e-96 355.5 656 35.7
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 1.4e-95 354.8 671 37.7
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.8e-95 354.4 357 52.7
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 3.4e-94 350.1 653 37.5
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 7.6e-94 349.0 408 48.3
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 2.9e-93 347.1 652 37.0
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 2.9e-93 347.1 652 37.0
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 2.5e-92 344.0 298 56.0
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.5e-92 344.0 299 57.2
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 2.7e-91 340.5 646 37.6
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 2.7e-91 340.5 311 55.0
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 6.0e-91 339.3 263 62.7
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 6.0e-91 339.3 297 57.9
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.3e-90 338.2 629 37.8
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.8e-90 337.8 642 37.7
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.8e-90 337.8 648 37.3
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.3e-90 337.4 640 37.5
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 8.7e-90 335.5 300 57.0
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 2.0e-86 324.3 273 56.4
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 2.0e-86 324.3 633 36.8
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.7e-85 321.2 650 36.2
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 2.2e-85 320.9 526 39.0
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 5.0e-85 319.7 650 36.0
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 6.5e-85 319.3 484 40.1
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.4e-84 318.2 301 54.5
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 3.6e-83 313.5 780 33.6
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.8e-82 311.2 272 54.8
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 3.9e-82 310.1 355 47.6
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 3.3e-81 307.0 396 45.5
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 5.7e-81 306.2 329 48.9
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 7.4e-81 305.8 329 48.9
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 8.2e-80 302.4 623 35.8
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.8e-79 301.2 272 53.3
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 7.7e-78 295.8 441 44.4
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.4e-76 291.6 623 35.3
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.2e-75 288.5 226 65.5
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.4e-68 265.0 309 47.6
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 3.2e-60 237.3 490 34.3
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.2e-59 235.3 228 50.0
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 4.8e-56 223.4 247 45.7
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.2e-54 218.8 301 39.9
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 3.8e-53 213.8 155 67.1
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.4e-50 205.3 159 62.3
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 5.7e-49 199.9 234 46.6
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 1.5e-44 185.3 274 39.4
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 4.5e-38 163.7 200 46.5
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.2e-34 150.2 119 61.3
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 2.0e-30 138.3 488 28.1
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 1.0e-29 136.0 147 49.0
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.8e-26 125.2 100 64.0
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.8e-26 125.2 128 50.0
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 9.8e-25 119.4 164 37.8
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 1.6e-22 112.1 255 33.7
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 4.6e-22 110.5 106 50.9
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 6.0e-22 110.2 83 61.4
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.7e-16 92.0 66 68.2
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 1.4e-15 89.0 174 29.3
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.9e-15 88.6 79 50.6
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 1.9e-15 88.6 102 49.0
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 6.0e-14 83.6 55 72.7
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 6.0e-14 83.6 55 72.7
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 7.3e-12 76.6 55 67.3
Cfa010667 Carpinus fangiana HOM05D001360 ORTHO05D001231 1.4e-10 72.4 111 44.1
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.9e-07 62.0 71 46.5


User provided reference genes

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