Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 1.7e-114 416.0 205 100.0
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 2.1e-77 292.7 309 56.3
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 2.2e-66 256.1 155 84.5
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 2.2e-58 229.6 160 73.1
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.4e-57 226.9 160 73.1
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.4e-57 226.9 160 73.1
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 7.2e-57 224.6 160 71.9
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.6e-56 223.4 160 71.9
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 3.9e-55 218.8 290 45.9
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 1.9e-54 216.5 167 64.7
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 4.3e-54 215.3 162 67.9
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 7.4e-54 214.5 165 67.9
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 9.7e-54 214.2 154 72.1
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 1.3e-53 213.8 154 68.2
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 2.8e-53 212.6 154 71.4
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 3.7e-53 212.2 177 61.0
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 8.2e-53 211.1 154 67.5
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 1.4e-52 210.3 170 65.3
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 1.8e-52 209.9 151 68.2
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 2.4e-52 209.5 169 65.1
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 4.1e-52 208.8 166 66.3
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 4.1e-52 208.8 191 59.2
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 5.3e-52 208.4 171 64.9
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 3.4e-51 205.7 169 63.3
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 3.4e-51 205.7 166 63.9
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 1.0e-50 204.1 169 64.5
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 2.2e-50 203.0 151 68.2
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 2.9e-50 202.6 193 58.5
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 1.4e-49 200.3 169 59.2
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 7.2e-49 198.0 121 81.0
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 7.2e-49 198.0 154 63.6
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 2.7e-48 196.1 149 67.8
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 2.7e-48 196.1 169 60.9
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 1.0e-47 194.1 150 66.7
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 1.0e-47 194.1 186 57.5
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 2.3e-47 193.0 157 61.8
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 2.3e-47 193.0 157 61.1
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 3.0e-47 192.6 199 53.8
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 5.1e-47 191.8 157 61.1
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 1.5e-46 190.3 185 53.5
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 2.6e-46 189.5 190 55.3
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 7.4e-46 188.0 157 60.5
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 7.4e-46 188.0 173 59.5
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 9.7e-46 187.6 196 53.6
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 1.7e-45 186.8 189 55.6
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 2.2e-45 186.4 169 59.2
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 4.8e-45 185.3 172 57.6
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 4.8e-45 185.3 158 62.0
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 8.2e-45 184.5 156 62.2
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 8.2e-45 184.5 158 60.8
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 1.1e-44 184.1 152 62.5
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 1.1e-44 184.1 157 60.5
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 1.4e-44 183.7 152 61.2
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 1.8e-44 183.3 194 53.1
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 2.4e-44 183.0 172 56.4
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 4.1e-44 182.2 171 53.8
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 5.3e-44 181.8 197 53.3
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 5.3e-44 181.8 180 53.3
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 5.3e-44 181.8 155 60.0
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 6.9e-44 181.4 163 55.8
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 6.9e-44 181.4 155 60.0
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 9.1e-44 181.0 151 62.3
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 1.2e-43 180.6 204 50.0
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 1.2e-43 180.6 156 58.3
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 1.5e-43 180.3 167 57.5
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 2.0e-43 179.9 161 56.5
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 2.0e-43 179.9 175 53.1
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 1.3e-42 177.2 163 53.4
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 1.3e-42 177.2 159 59.7
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 2.2e-42 176.4 164 56.1
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 2.9e-42 176.0 161 55.9
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 2.9e-42 176.0 174 54.0
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 3.8e-42 175.6 201 47.8
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 3.8e-42 175.6 159 57.9
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 5.0e-42 175.3 153 58.8
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 5.0e-42 175.3 173 52.0
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 6.5e-42 174.9 169 54.4
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 8.5e-42 174.5 169 52.1
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 1.4e-41 173.7 169 52.1
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 1.4e-41 173.7 169 52.1
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 2.5e-41 172.9 169 51.5
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 3.2e-41 172.6 169 51.5
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 3.2e-41 172.6 151 57.6
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 9.4e-41 171.0 154 57.1
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 1.2e-40 170.6 190 50.0
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 2.1e-40 169.9 158 51.9
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 1.4e-39 167.2 193 48.2
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.8e-39 166.8 154 57.1
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 3.0e-39 166.0 173 53.8
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 2.0e-38 163.3 153 56.2
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 3.3e-38 162.5 249 41.4
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 5.7e-38 161.8 153 55.6
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 7.4e-38 161.4 154 55.8
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 6.3e-37 158.3 150 54.7
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 2.4e-36 156.4 153 49.7
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 2.0e-35 153.3 154 50.0
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 4.5e-35 152.1 150 51.3
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 1.0e-34 151.0 150 51.3
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 7.7e-27 124.8 135 45.9
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 5.0e-26 122.1 125 48.8
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 2.6e-22 109.8 234 35.0
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 2.2e-21 106.7 154 39.6
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 3.8e-18 95.9 150 34.0
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 4.7e-16 89.0 153 32.7
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 3.4e-14 82.8 70 62.9
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 1.7e-13 80.5 65 64.6
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 2.2e-13 80.1 70 50.0
Manes.05G203050 Manihot esculenta HOM05D006765 ORTHO05D008554 2.9e-10 69.7 67 58.2
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 7.5e-06 55.1 188 26.6


User provided reference genes

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