Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 1.0e-29 132.9 75 100.0
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 1.2e-22 109.4 74 85.1
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 3.6e-22 107.8 75 84.0
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 6.7e-21 103.6 75 81.3
Cfa011502 Carpinus fangiana HOM05D002160 ORTHO05D002012 1.1e-15 86.3 102 58.8
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.1e-15 86.3 71 62.0
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 1.9e-15 85.5 73 74.0
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 1.9e-15 85.5 73 74.0
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.9e-15 85.5 52 73.1
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.9e-15 85.5 71 54.9
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.2e-15 84.3 54 72.2
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.4e-15 83.2 72 61.1
MD11G1109100 Malus domestica HOM05D002160 ORTHO05D002012 3.6e-14 81.3 74 71.6
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.7e-14 80.9 54 63.0
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 4.7e-14 80.9 55 69.1
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 8.0e-14 80.1 54 75.9
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.0e-13 79.7 52 65.4
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 1.4e-13 79.3 52 73.1
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.3e-13 78.6 52 63.5
MD03G1093800 Malus domestica HOM05D015563 ORTHO05D002012 2.3e-13 78.6 74 71.6
MD11G1109300 Malus domestica HOM05D015563 ORTHO05D002012 2.3e-13 78.6 74 71.6
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 3.0e-13 78.2 52 65.4
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 3.0e-13 78.2 55 63.6
MD11G1109200 Malus domestica HOM05D015563 ORTHO05D002012 5.2e-13 77.4 74 68.9
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 1.2e-12 76.3 74 56.8
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 2.0e-12 75.5 56 58.9
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.6e-12 75.1 54 55.6
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.4e-12 74.7 54 55.6
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.4e-12 74.3 71 52.1
FAN21G3063 Fragaria x ananassa HOM05D015563 ORTHO05D002012 4.4e-12 74.3 74 64.9
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 5.7e-12 73.9 54 53.7
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 5.7e-12 73.9 54 53.7
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 5.7e-12 73.9 55 60.0
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 9.7e-12 73.2 54 53.7
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 9.7e-12 73.2 52 57.7
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 9.7e-12 73.2 52 57.7
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 1.7e-11 72.4 53 60.4
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 1.7e-11 72.4 55 58.2
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.7e-11 72.4 54 55.6
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 2.2e-11 72.0 53 60.4
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.2e-11 72.0 52 55.8
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 2.8e-11 71.6 55 56.4
MD03G1094500 Malus domestica HOM05D015563 ORTHO05D002012 2.8e-11 71.6 77 66.2
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.8e-11 71.6 55 60.0
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 3.7e-11 71.2 73 54.8
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.7e-11 71.2 51 58.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 4.8e-11 70.9 52 53.8
MD03G1093900 Malus domestica HOM05D002160 ORTHO05D002012 4.8e-11 70.9 74 68.9
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 6.3e-11 70.5 58 60.3
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 6.3e-11 70.5 52 51.9
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 6.3e-11 70.5 53 58.5
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 6.3e-11 70.5 55 58.2
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.3e-11 70.1 54 50.0
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.3e-11 70.1 54 50.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 8.3e-11 70.1 54 50.0
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 8.3e-11 70.1 76 51.3
CANSAT54G1607 Cannabis sativa HOM05D002160 ORTHO05D002012 1.1e-10 69.7 67 70.1
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 1.1e-10 69.7 53 60.4
Potri.019G100001 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.1e-10 69.7 70 65.7
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.8e-10 68.9 55 61.8
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 1.8e-10 68.9 53 54.7
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 2.4e-10 68.6 55 54.5
CANSAT54G0665 Cannabis sativa HOM05D002160 ORTHO05D002012 3.1e-10 68.2 63 65.1
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 4.1e-10 67.8 54 55.6
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 4.1e-10 67.8 58 51.7
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 5.3e-10 67.4 55 52.7
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.3e-10 67.4 72 68.1
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 5.3e-10 67.4 55 60.0
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 7.0e-10 67.0 74 62.2
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 7.0e-10 67.0 73 53.4
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 9.1e-10 66.6 56 55.4
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 9.1e-10 66.6 56 55.4
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 9.1e-10 66.6 73 60.3
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 9.1e-10 66.6 53 50.9
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 9.1e-10 66.6 55 56.4
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.2e-09 66.2 80 53.8
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.2e-09 66.2 80 53.8
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.2e-09 66.2 55 56.4
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.2e-09 66.2 54 59.3
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.2e-09 66.2 56 53.6
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.2e-09 66.2 73 50.7
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.2e-09 66.2 54 51.9
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.6e-09 65.9 57 50.9
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.6e-09 65.9 58 46.6
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 2.0e-09 65.5 73 54.8
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 2.0e-09 65.5 72 58.3
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.0e-09 65.5 72 65.3
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.0e-09 65.5 72 65.3
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 2.0e-09 65.5 55 50.9
Sabra19G0112000 Salix brachista HOM05D002160 ORTHO05D002012 2.0e-09 65.5 64 50.0
MD11G1109400 Malus domestica HOM05D002160 ORTHO05D002012 2.7e-09 65.1 74 68.9
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 2.7e-09 65.1 72 55.6
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.5e-09 64.7 59 52.5
RcHm_v2.0_Chr5g0064481 Rosa chinensis HOM05D024790 ORTHO05D025476 3.5e-09 64.7 74 67.6
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.5e-09 64.3 63 50.8
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 4.5e-09 64.3 55 56.4
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 4.5e-09 64.3 54 59.3
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 4.5e-09 64.3 54 59.3
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 4.5e-09 64.3 54 59.3
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 4.5e-09 64.3 54 59.3
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 4.5e-09 64.3 51 52.9
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 4.5e-09 64.3 71 54.9
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 4.5e-09 64.3 72 51.4
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 5.9e-09 63.9 55 50.9
Glyma.14G093100 Glycine max HOM05D002160 ORTHO05D002012 7.7e-09 63.5 72 58.3
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.7e-09 63.5 72 65.3
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 7.7e-09 63.5 73 49.3
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 7.7e-09 63.5 55 61.8
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 1.0e-08 63.2 53 58.5
Potri.013G131200 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.0e-08 63.2 70 61.4
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 1.3e-08 62.8 55 54.5
Potri.001G040200 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.3e-08 62.8 70 62.9
Potri.001G041268 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.3e-08 62.8 70 62.9
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.7e-08 62.4 53 58.5
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 1.7e-08 62.4 72 55.6
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 1.7e-08 62.4 71 54.9
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 2.2e-08 62.0 75 49.3
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 2.2e-08 62.0 75 49.3
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.2e-08 62.0 55 52.7
Os11g0704500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.2e-08 62.0 74 55.4
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 2.9e-08 61.6 75 49.3
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.9e-08 61.6 54 48.1
Ciclev10013803m.g Citrus clementina HOM05D002160 ORTHO05D002012 2.9e-08 61.6 62 50.0
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 3.8e-08 61.2 74 45.9
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 3.8e-08 61.2 74 45.9
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 5.0e-08 60.8 74 45.9
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 5.0e-08 60.8 54 48.1
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.0e-08 60.8 44 61.4
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 5.0e-08 60.8 57 50.9
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.0e-08 60.8 55 49.1
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 6.5e-08 60.5 74 45.9
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 6.5e-08 60.5 74 45.9
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 6.5e-08 60.5 74 45.9
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 6.5e-08 60.5 74 45.9
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 6.5e-08 60.5 55 50.9
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 6.5e-08 60.5 55 50.9
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 8.5e-08 60.1 71 40.8
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 8.5e-08 60.1 54 57.4
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 8.5e-08 60.1 77 49.4
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.1e-07 59.7 57 57.9
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 59 49.2
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 55 52.7
Thecc.05G201700 Theobroma cacao HOM05D002160 ORTHO05D002012 1.1e-07 59.7 52 55.8
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 1.5e-07 59.3 72 55.6
Eucgr.K03136 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.5e-07 59.3 83 49.4
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.9e-07 58.9 60 50.0
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.9e-07 58.9 60 50.0
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.9e-07 58.9 60 50.0
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 3.2e-07 58.2 53 49.1
TPR.G5610 Trifolium pratense HOM05D002160 ORTHO05D002012 3.2e-07 58.2 68 54.4
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 4.2e-07 57.8 57 56.1
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 4.2e-07 57.8 54 53.7
Lalb_Chr12g0210241 Lupinus albus HOM05D002160 ORTHO05D002012 4.2e-07 57.8 72 55.6
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 7.2e-07 57.0 55 54.5
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 7.2e-07 57.0 76 42.1
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 7.2e-07 57.0 72 51.4
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 7.2e-07 57.0 56 50.0
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 1.2e-06 56.2 60 48.3
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.6e-06 55.8 74 55.4
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 1.6e-06 55.8 56 50.0
FvH4_3g36030 Fragaria vesca HOM05D024790 ORTHO05D025476 1.6e-06 55.8 74 62.2
FAN16G3235 Fragaria x ananassa HOM05D024790 ORTHO05D025476 1.6e-06 55.8 74 62.2
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 1.6e-06 55.8 57 52.6
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.1e-06 55.5 56 51.8
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 2.1e-06 55.5 74 48.6
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 2.1e-06 55.5 55 56.4
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 2.1e-06 55.5 72 51.4
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.1e-06 55.5 55 54.5
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.7e-06 55.1 57 54.4
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 2.7e-06 55.1 56 51.8
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 2.7e-06 55.1 57 54.4
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.7e-06 55.1 60 43.3
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 3.6e-06 54.7 65 50.8
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 3.6e-06 54.7 65 50.8
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 3.6e-06 54.7 65 50.8
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 3.6e-06 54.7 56 51.8
Cfa011499 Carpinus fangiana HOM05D002160 ORTHO05D002012 3.6e-06 54.7 56 53.6
GSVIVG01024969001 Vitis vinifera HOM05D059473 ORTHO05D002012 3.6e-06 54.7 59 67.8
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 4.7e-06 54.3 56 51.8
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 4.7e-06 54.3 73 43.8
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 6.1e-06 53.9 57 56.1
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 6.1e-06 53.9 57 54.4
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 8.0e-06 53.5 65 49.2
Haze_24094 Corylus avellana HOM05D002160 ORTHO05D002012 8.0e-06 53.5 53 52.8
Peaxi162Scf00165g01210 Petunia axillaris HOM05D002160 ORTHO05D002012 8.0e-06 53.5 48 52.1
QL01p032020 Quercus lobata HOM05D002160 ORTHO05D002012 8.0e-06 53.5 37 73.0


User provided reference genes

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