Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 4.9e-134 481.1 239 100.0
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 7.9e-108 394.0 236 83.5
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 6.3e-105 384.4 225 85.3
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.2e-100 370.2 226 81.0
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.7e-99 364.4 226 80.1
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 5.9e-95 351.3 242 75.6
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.8e-94 348.6 253 70.8
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-93 347.1 263 68.8
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.9e-93 346.3 226 77.0
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.2e-93 345.5 273 66.7
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 4.7e-92 341.7 228 76.3
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 8.0e-92 340.9 229 76.0
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 8.0e-92 340.9 228 75.9
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.8e-91 339.7 228 75.9
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.8e-91 339.7 232 75.0
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.0e-91 339.0 227 76.2
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.7e-89 332.0 232 73.3
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 2.4e-88 329.3 226 75.2
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.0e-86 323.9 235 71.1
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 2.9e-86 322.4 226 73.0
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 3.8e-86 322.0 226 73.0
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.5e-85 319.3 237 72.2
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 9.8e-82 307.4 238 68.1
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.3e-81 307.0 228 68.9
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.3e-81 307.0 228 69.7
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.8e-80 303.1 235 68.5
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 3.1e-80 302.4 232 68.5
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 7.0e-80 301.2 228 68.9
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 9.2e-80 300.8 226 68.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 1.6e-79 300.1 244 63.9
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 2.0e-79 299.7 232 66.8
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 3.5e-79 298.9 228 68.4
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.0e-78 297.4 227 67.0
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.3e-78 297.0 228 68.4
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.7e-78 296.6 231 66.7
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.3e-78 296.2 242 64.9
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.9e-78 295.8 237 67.1
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.1e-77 293.9 232 65.1
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.5e-77 293.5 228 69.7
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.9e-77 293.1 237 66.7
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.9e-77 293.1 227 67.0
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 4.3e-77 292.0 196 74.5
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.3e-77 292.0 227 66.5
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 7.3e-77 291.2 204 72.5
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 9.5e-77 290.8 227 67.0
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 9.5e-77 290.8 228 66.2
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.2e-76 290.4 228 67.5
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.1e-76 289.7 253 62.5
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 2.8e-76 289.3 227 66.1
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 6.1e-76 288.1 218 67.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.0e-75 287.3 232 65.9
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.0e-75 287.3 234 64.5
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.0e-75 287.3 233 64.8
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.4e-75 287.0 245 63.7
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 2.3e-75 286.2 227 66.1
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 3.0e-75 285.8 219 66.7
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 4.4e-74 282.0 228 65.8
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 4.4e-74 282.0 233 64.4
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 5.8e-74 281.6 253 60.1
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 7.5e-74 281.2 216 69.9
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 9.8e-74 280.8 233 63.9
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.2e-73 279.6 217 65.4
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.9e-73 279.3 240 61.2
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 8.3e-73 277.7 228 62.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.8e-72 276.6 234 62.4
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 7.0e-72 274.6 198 68.7
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 4.6e-71 271.9 181 71.8
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 6.0e-71 271.6 213 64.3
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 7.8e-71 271.2 217 64.5
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 3.0e-70 269.2 180 76.7
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 3.0e-70 269.2 228 61.4
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 3.9e-70 268.9 227 63.0
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 6.6e-70 268.1 215 62.8
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.1e-69 267.3 198 69.2
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.5e-69 266.9 198 69.2
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.9e-69 266.5 290 52.4
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.9e-69 266.5 238 60.9
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.9e-69 266.5 273 56.4
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.3e-69 265.8 198 68.7
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 7.3e-69 264.6 239 59.8
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 7.3e-69 264.6 269 56.9
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 9.5e-69 264.2 207 67.1
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 9.5e-69 264.2 240 60.4
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 3.6e-68 262.3 239 60.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 8.0e-68 261.2 236 60.2
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 3.1e-67 259.2 239 60.3
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 3.1e-67 259.2 239 60.3
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 3.1e-67 259.2 239 60.3
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 3.1e-67 259.2 239 60.3
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 5.2e-67 258.5 236 60.6
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 8.9e-67 257.7 212 65.1
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 8.9e-67 257.7 239 59.8
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-66 256.1 232 62.1
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-66 256.1 232 62.1
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.6e-66 256.1 232 62.1
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 1.7e-65 253.4 230 61.7
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 5.4e-64 248.4 187 66.3
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 9.2e-64 247.7 216 61.1
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 8.6e-62 241.1 236 58.5
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 8.1e-60 234.6 234 58.5
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 8.1e-60 234.6 180 63.3
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 5.2e-59 231.9 193 62.2
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.4e-58 228.8 208 58.7
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.3e-54 216.5 420 38.1
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.5e-53 213.0 205 56.1
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.5e-53 213.0 227 55.1
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 2.4e-48 196.4 181 55.8
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 1.7e-46 190.3 179 53.6
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 5.1e-46 188.7 162 59.9
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.1e-44 183.3 214 52.3
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.6e-44 182.6 178 52.8
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.4e-43 179.9 176 51.1
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 8.4e-41 171.4 127 71.7
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.3e-38 164.1 133 66.2
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 9.6e-37 157.9 126 65.1
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.6e-34 149.8 115 62.6
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 2.9e-33 146.4 105 69.5
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 6.0e-31 138.7 103 65.0
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 3.0e-30 136.3 75 81.3
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 3.9e-30 136.0 93 68.8
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 3.4e-26 122.9 81 72.8
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 5.8e-26 122.1 77 76.6
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 5.8e-26 122.1 77 76.6
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.7e-25 120.6 67 85.1
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 4.2e-24 115.9 176 37.5
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 3.0e-22 109.8 108 52.8
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 7.4e-21 105.1 73 69.9
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.9e-19 98.6 91 59.3
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 8.4e-17 91.7 96 49.0
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 4.2e-16 89.4 76 56.6
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 5.5e-16 89.0 80 62.5
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 6.0e-15 85.5 118 41.5
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 7.9e-15 85.1 72 59.7
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 7.9e-15 85.1 42 85.7
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 5.1e-14 82.4 48 75.0
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 8.7e-14 81.6 105 48.6
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.9e-13 80.5 44 79.5
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 5.7e-13 79.0 46 76.1
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.3e-12 77.8 57 61.4
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 9.0e-11 71.6 173 32.4
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 1.5e-10 70.9 78 51.3
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 2.0e-10 70.5 73 49.3
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 3.6e-07 59.7 184 27.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.0e-06 56.6 161 31.7


User provided reference genes

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