Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 3.4e-98 361.7 185 100.0
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.8e-70 269.6 185 77.8
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 5.6e-69 264.6 185 76.8
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.8e-60 235.7 190 72.6
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 2.4e-59 232.6 188 70.7
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.4e-57 224.2 189 71.4
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 1.9e-56 223.0 187 68.4
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-54 216.9 194 69.1
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.5e-53 213.4 187 65.8
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.5e-53 213.4 189 66.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.5e-53 212.6 184 66.8
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.1e-52 209.5 189 63.5
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.8e-52 208.4 207 65.2
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.2e-50 203.8 186 64.5
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.2e-50 203.8 187 66.3
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.5e-50 203.4 187 65.8
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.7e-49 199.9 187 62.0
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.2e-49 199.5 180 63.3
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 4.2e-48 195.3 188 63.3
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 7.2e-48 194.5 187 60.4
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 7.9e-47 191.0 186 60.2
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.0e-46 190.7 189 57.1
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 6.7e-46 188.0 187 58.3
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 8.7e-46 187.6 176 63.6
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 8.7e-46 187.6 191 59.7
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.1e-45 187.2 188 62.8
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.1e-45 187.2 185 60.0
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.1e-45 187.2 185 60.0
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.1e-45 187.2 185 60.0
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.1e-45 187.2 187 57.8
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.1e-45 187.2 188 63.3
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 3.3e-45 185.7 188 59.0
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 5.7e-45 184.9 188 58.0
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.7e-44 182.2 181 61.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 8.2e-44 181.0 188 60.1
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 8.2e-44 181.0 188 58.5
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 1.1e-43 180.6 182 56.6
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.4e-43 180.3 187 57.8
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.8e-43 179.9 189 57.1
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.5e-42 176.8 186 56.5
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 3.4e-42 175.6 183 59.6
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 4.5e-42 175.3 186 57.0
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.5e-42 175.3 184 58.2
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 7.7e-42 174.5 186 57.0
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.7e-41 173.3 187 56.1
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.2e-41 172.9 190 54.7
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.9e-40 169.9 189 55.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-40 169.5 187 56.1
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 4.2e-40 168.7 187 55.6
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 5.5e-40 168.3 187 54.0
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 3.6e-39 165.6 185 54.1
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 6.1e-39 164.9 187 54.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 7.9e-39 164.5 188 53.7
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.0e-38 164.1 182 57.7
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 5.1e-38 161.8 182 54.4
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 8.8e-38 161.0 187 54.0
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 1.5e-37 160.2 188 51.6
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.5e-37 160.2 187 52.9
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 2.0e-37 159.8 188 54.8
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.4e-37 158.7 182 58.2
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 7.4e-37 157.9 184 51.6
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 6.3e-36 154.8 188 51.6
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.4e-35 153.7 184 51.1
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.8e-35 153.3 188 54.8
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 4.1e-35 152.1 188 52.1
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 5.3e-35 151.8 185 50.3
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.2e-34 150.6 187 48.7
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.5e-34 150.2 188 49.5
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 4.5e-34 148.7 187 56.1
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 2.2e-33 146.4 188 50.5
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 2.2e-33 146.4 183 50.8
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 6.5e-33 144.8 185 52.4
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 8.5e-33 144.4 184 52.2
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.1e-32 144.1 188 50.5
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.4e-32 143.7 188 51.1
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.9e-32 143.3 171 56.1
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 2.5e-32 142.9 184 50.0
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.5e-32 142.9 171 56.1
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 5.5e-32 141.7 186 52.2
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 9.4e-32 141.0 189 50.8
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 6.1e-31 138.3 171 55.0
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.9e-31 137.9 182 52.7
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 7.9e-31 137.9 188 51.6
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 7.9e-31 137.9 200 48.5
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 7.9e-31 137.9 189 51.3
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.4e-30 137.1 185 49.2
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 2.3e-30 136.3 188 47.9
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 5.2e-30 135.2 194 54.1
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 8.8e-30 134.4 195 47.7
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-29 134.0 186 48.9
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.1e-29 134.0 182 52.2
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.6e-29 132.9 170 50.6
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.4e-29 132.1 186 46.2
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 7.4e-29 131.3 186 44.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 3.7e-28 129.0 184 45.1
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.4e-27 127.1 101 71.3
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.8e-27 126.7 181 47.5
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.2e-26 124.0 182 47.8
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 2.0e-26 123.2 188 49.5
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 7.7e-26 121.3 182 47.3
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-25 120.9 112 67.0
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 1.3e-25 120.6 187 44.9
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 9.4e-24 114.4 194 42.8
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 3.6e-23 112.5 183 44.8
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 4.7e-23 112.1 172 41.9
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 8.0e-23 111.3 185 43.8
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.4e-22 110.5 148 50.7
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 6.7e-22 108.2 168 45.8
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.3e-21 105.9 168 45.8
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 4.4e-21 105.5 184 43.5
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 4.4e-21 105.5 184 43.5
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 4.4e-21 105.5 184 43.5
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.4e-21 105.5 187 42.2
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 4.4e-21 105.5 199 40.7
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 5.7e-21 105.1 185 42.7
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 5.7e-21 105.1 75 72.0
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.7e-20 103.6 227 39.2
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.8e-20 102.1 178 43.8
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.1e-19 100.9 178 43.3
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.8e-19 100.1 134 46.3
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.4e-19 99.8 76 72.4
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.2e-18 97.4 138 48.6
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.0e-18 96.7 178 42.1
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.7e-18 96.3 172 40.7
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 7.7e-18 94.7 82 63.4
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.2e-17 93.2 178 41.6
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 1.5e-16 90.5 153 45.1
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.7e-15 86.3 151 43.0
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 1.4e-14 84.0 174 39.1
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 5.2e-14 82.0 169 39.6
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 1.7e-12 77.0 136 42.6
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-11 74.3 181 39.2
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 5.4e-11 72.0 191 32.5
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 1.2e-10 70.9 217 32.7
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.6e-10 70.5 141 42.6
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.3e-09 67.4 63 58.7
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 3.8e-09 65.9 138 37.7
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 1.9e-08 63.5 228 32.0
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 5.5e-08 62.0 146 37.0
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 7.2e-08 61.6 79 51.9
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 7.2e-08 61.6 93 44.1
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 2.8e-07 59.7 149 36.9
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 3.6e-07 59.3 137 38.7
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 6.8e-06 55.1 59 61.0


User provided reference genes

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