Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 3.3e-39 164.5 77 100.0
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 8.4e-27 123.2 77 77.9
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 9.6e-23 109.8 83 68.7
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 5.7e-15 84.0 59 64.4
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.0e-11 73.2 63 57.1
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 1.3e-11 72.8 68 52.9
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 2.2e-11 72.0 73 52.1
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 3.8e-11 71.2 64 50.0
FAN16G1658 Fragaria x ananassa HOM05D023252 ORTHO05D025479 5.0e-11 70.9 84 47.6
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 5.0e-11 70.9 66 51.5
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 1.1e-10 69.7 65 50.8
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.5e-10 68.6 64 50.0
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.2e-10 68.2 66 53.0
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 7.2e-10 67.0 62 50.0
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 7.2e-10 67.0 73 49.3
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 7.2e-10 67.0 66 50.0
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 9.4e-10 66.6 61 52.5
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 1.2e-09 66.2 59 54.2
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 1.2e-09 66.2 68 51.5
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 1.2e-09 66.2 74 48.6
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 1.6e-09 65.9 64 48.4
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.6e-09 65.9 64 48.4
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 1.6e-09 65.9 68 52.9
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.1e-09 65.5 64 48.4
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 2.1e-09 65.5 58 55.2
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 2.7e-09 65.1 68 48.5
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 2.7e-09 65.1 69 44.9
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 4.6e-09 64.3 72 48.6
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 7.9e-09 63.5 60 48.3
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 7.9e-09 63.5 60 48.3
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 1.0e-08 63.2 75 46.7
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.0e-08 63.2 71 46.5
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.4e-08 62.8 58 55.2
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 1.8e-08 62.4 62 51.6
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 1.8e-08 62.4 65 49.2
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.3e-08 62.0 61 50.8
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.3e-08 62.0 61 50.8
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 2.3e-08 62.0 60 51.7
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 3.0e-08 61.6 71 47.9
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 3.9e-08 61.2 60 46.7
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 3.9e-08 61.2 56 55.4
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 5.1e-08 60.8 62 51.6
FAN21G1179 Fragaria x ananassa HOM05D023252 ORTHO05D025479 5.1e-08 60.8 84 41.7
PGSC0003DMG400027224 Solanum tuberosum HOM05D004372 ORTHO05D004331 5.1e-08 60.8 65 44.6
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 6.7e-08 60.5 72 43.1
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 6.7e-08 60.5 55 56.4
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 6.7e-08 60.5 57 54.4
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 6.7e-08 60.5 67 52.2
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 6.7e-08 60.5 56 55.4
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 1.1e-07 59.7 60 46.7
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 1.1e-07 59.7 60 53.3
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.5e-07 59.3 61 49.2
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 2.6e-07 58.5 61 50.8
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 2.6e-07 58.5 68 47.1
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.6e-07 58.5 61 47.5
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 2.6e-07 58.5 67 47.8
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 3.3e-07 58.2 66 43.9
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 3.3e-07 58.2 65 44.6
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 3.3e-07 58.2 61 47.5
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 4.4e-07 57.8 72 43.1
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 4.4e-07 57.8 60 45.0
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 5.7e-07 57.4 60 53.3
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 5.7e-07 57.4 64 48.4
Solyc05g053050.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 5.7e-07 57.4 66 42.4
PGSC0003DMG400030326 Solanum tuberosum HOM05D004372 ORTHO05D004331 5.7e-07 57.4 69 43.5
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 7.4e-07 57.0 57 52.6
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 7.4e-07 57.0 57 52.6
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 7.4e-07 57.0 65 41.5
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 9.7e-07 56.6 66 42.4
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 9.7e-07 56.6 67 41.8
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 9.7e-07 56.6 58 48.3
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 9.7e-07 56.6 59 49.2
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 9.7e-07 56.6 65 43.1
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 1.3e-06 56.2 57 50.9
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 1.3e-06 56.2 62 48.4
FAN11G2016 Fragaria x ananassa HOM05D023252 ORTHO05D025479 1.3e-06 56.2 82 39.0
Potri.009G034001 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.3e-06 56.2 57 56.1
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 1.7e-06 55.8 64 45.3
FAN25G3829 Fragaria x ananassa HOM05D023252 ORTHO05D025479 1.7e-06 55.8 82 39.0
Solyc06g076310.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 1.7e-06 55.8 68 45.6
Sopen06g032730 Solanum pennellii HOM05D004372 ORTHO05D004331 1.7e-06 55.8 68 45.6
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 2.2e-06 55.5 67 46.3
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.2e-06 55.5 60 51.7
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 3.7e-06 54.7 64 45.3
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 3.7e-06 54.7 64 45.3
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 3.7e-06 54.7 85 41.2
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 3.7e-06 54.7 57 50.9
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 3.7e-06 54.7 67 40.3
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 4.8e-06 54.3 69 47.8
arahy.Tifrunner.gnm1.ann1.JA3FRH Arachis hypogaea HOM05D016115 ORTHO05D004331 6.3e-06 53.9 73 45.2
MSTRG.21205 Avicennia marina HOM05D029649 ORTHO05D004331 6.3e-06 53.9 55 52.7
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 6.3e-06 53.9 60 53.3
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 6.3e-06 53.9 60 53.3
EL10Ac7g16049 Beta vulgaris HOM05D004372 ORTHO05D004331 8.2e-06 53.5 55 49.1
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 8.2e-06 53.5 57 47.4
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 8.2e-06 53.5 67 46.3


User provided reference genes

Program Settings