Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 1.6e-165 586.6 466 100.0
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 1.1e-113 414.5 484 65.3
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 9.5e-73 278.5 559 45.4
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 1.2e-62 245.0 595 39.5
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 5.8e-62 242.7 482 41.7
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 6.4e-61 239.2 333 47.1
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 1.4e-60 238.0 411 40.6
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.2e-59 235.0 398 41.5
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.3e-55 220.7 471 40.3
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 4.0e-55 219.9 398 40.7
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 8.9e-55 218.8 444 36.7
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 4.4e-54 216.5 472 36.9
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 8.4e-53 212.2 397 40.1
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 1.1e-52 211.8 473 39.5
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.4e-52 211.5 399 40.1
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 1.6e-51 208.0 403 46.7
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 3.5e-51 206.8 396 40.2
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.5e-51 206.8 595 36.5
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 6.0e-51 206.1 353 41.9
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 2.3e-50 204.1 345 40.3
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 6.6e-50 202.6 573 37.9
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 1.2e-48 198.4 356 39.0
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 2.8e-48 197.2 407 42.0
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 2.8e-48 197.2 435 34.7
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 4.7e-48 196.4 437 34.3
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.1e-47 195.3 347 39.2
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 5.8e-46 189.5 345 39.1
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.8e-46 189.5 340 39.7
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 4.9e-45 186.4 472 31.4
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 6.4e-45 186.0 477 33.5
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 6.4e-45 186.0 594 35.5
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 8.4e-45 185.7 595 34.8
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 8.4e-45 185.7 399 40.1
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 7.1e-44 182.6 349 36.7
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 9.3e-44 182.2 412 39.3
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 9.3e-44 182.2 342 45.6
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.2e-43 181.8 430 35.1
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 4.6e-43 179.9 407 36.4
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 2.3e-42 177.6 346 43.6
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 3.0e-42 177.2 470 35.1
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 3.9e-42 176.8 410 33.4
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 5.1e-42 176.4 412 35.0
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 1.1e-41 175.3 400 41.5
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 2.5e-41 174.1 412 37.9
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 4.3e-41 173.3 438 34.7
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 6.2e-40 169.5 382 38.7
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 8.1e-40 169.1 433 33.3
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 8.1e-40 169.1 423 41.4
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 1.2e-38 165.2 399 36.8
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 1.2e-38 165.2 424 44.1
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 1.5e-38 164.9 346 39.9
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.7e-37 161.4 405 35.1
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 1.1e-36 158.7 407 38.6
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 1.4e-36 158.3 446 36.1
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.4e-36 158.3 406 47.3
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 1.9e-36 157.9 388 36.1
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 2.4e-36 157.5 405 38.0
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 4.2e-36 156.8 404 32.9
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 5.4e-36 156.4 423 43.5
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 4.6e-35 153.3 427 39.3
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 7.9e-35 152.5 348 34.5
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 6.6e-34 149.4 403 44.2
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 2.5e-33 147.5 398 32.4
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 9.6e-33 145.6 349 38.1
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 2.2e-29 134.4 434 30.2
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 3.8e-29 133.7 427 30.2
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 4.9e-29 133.3 359 35.7
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 1.9e-28 131.3 333 33.3
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 9.3e-28 129.0 429 28.4
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 2.7e-27 127.5 434 29.5
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 3.5e-27 127.1 428 34.1
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 7.9e-27 125.9 433 29.8
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.0e-26 125.6 450 29.6
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 1.3e-26 125.2 381 31.2
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.3e-26 125.2 433 29.3
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.9e-26 123.6 398 36.2
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 3.9e-26 123.6 381 31.0
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 3.9e-26 123.6 381 31.0
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 8.7e-26 122.5 433 28.9
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.9e-25 121.3 433 28.9
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 3.3e-25 120.6 429 29.4
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 3.3e-25 120.6 465 28.4
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 7.4e-25 119.4 368 31.5
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 9.6e-25 119.0 340 31.5
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 1.3e-24 118.6 433 28.4
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 2.1e-24 117.9 398 35.9
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 2.1e-24 117.9 405 30.4
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 2.8e-24 117.5 402 31.3
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 8.1e-24 115.9 195 42.1
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.2e-22 112.1 349 30.4
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.7e-21 108.2 400 30.2
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 2.2e-21 107.8 110 56.4
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 2.2e-21 107.8 183 40.4
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 6.5e-21 106.3 472 28.4
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 1.4e-20 105.1 314 30.6
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 1.9e-20 104.8 111 58.6
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 5.5e-20 103.2 190 40.5
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.2e-19 102.1 101 58.4
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 6.0e-19 99.8 427 27.9
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 5.1e-18 96.7 94 60.6
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 5.1e-18 96.7 94 60.6
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 8.7e-18 95.9 431 31.6
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.1e-17 95.5 467 25.3
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 3.3e-17 94.0 110 51.8
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 4.3e-17 93.6 95 56.8
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 3.7e-16 90.5 330 31.2
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 8.2e-16 89.4 409 27.1
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 1.4e-15 88.6 215 34.4
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.2e-14 85.5 470 27.0
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 3.4e-14 84.0 395 27.3
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 4.5e-14 83.6 129 44.2
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 4.5e-14 83.6 135 46.7
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 4.5e-14 83.6 135 46.7
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 4.5e-14 83.6 135 46.7
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.0e-13 82.4 337 29.4
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 5.0e-13 80.1 62 69.4
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 5.0e-13 80.1 62 69.4
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 2.5e-12 77.8 117 43.6
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 5.5e-12 76.6 92 48.9
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.6e-11 75.1 204 34.3
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.6e-11 75.1 186 29.6
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 2.7e-11 74.3 186 30.1
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 6.7e-10 69.7 83 45.8
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 6.7e-10 69.7 338 26.9
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.1e-07 62.4 82 47.6
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 1.2e-06 58.9 78 42.3
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.0e-06 58.2 85 42.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.4e-06 57.4 86 43.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.5e-06 57.0 65 49.2
HPP92_015481 Vanilla planifolia HOM05D043147 ORTHO05D007873 4.5e-06 57.0 70 40.0
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 5.9e-06 56.6 69 44.9
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 7.7e-06 56.2 61 49.2


User provided reference genes

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