Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 0.0e+00 1217.2 852 100.0
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 2.3e-226 789.6 907 70.0
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 2.4e-207 726.5 886 70.1
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 2.1e-195 686.8 871 69.8
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.3e-184 648.3 869 68.4
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 9.9e-177 624.8 869 67.9
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 7.1e-175 618.6 865 66.8
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.1e-172 611.3 870 66.9
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 7.1e-167 592.0 870 66.1
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.1e-130 471.9 926 55.2
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.5e-129 468.0 916 55.8
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.6e-126 458.0 905 55.6
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 2.7e-126 457.2 963 50.7
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 1.9e-119 434.5 896 53.3
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 9.4e-119 432.2 895 53.3
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 9.1e-114 415.6 813 57.3
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 3.5e-113 413.7 937 52.0
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.3e-112 411.8 907 50.7
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.6e-110 404.8 881 54.4
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 5.3e-106 389.8 901 52.1
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 5.3e-106 389.8 901 52.1
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.6e-105 388.3 962 51.5
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.0e-104 385.6 888 53.9
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.0e-104 385.6 932 50.6
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 5.5e-103 379.8 906 51.4
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 5.2e-101 373.2 890 54.9
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.4e-98 365.2 933 49.5
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.3e-96 357.8 872 53.2
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 8.6e-96 355.9 925 51.2
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.2e-95 353.6 929 49.7
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.5e-95 353.2 943 50.2
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.8e-93 348.2 921 50.4
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.2e-93 346.7 931 49.5
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.5e-92 345.1 884 52.0
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 4.1e-90 337.0 926 47.3
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 7.0e-90 336.3 917 51.3
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.6e-89 335.1 882 50.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 2.0e-89 334.7 912 52.0
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 7.8e-89 332.8 903 48.1
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 6.1e-86 323.2 975 48.0
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.0e-85 322.4 883 49.8
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 2.0e-84 318.2 904 50.4
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 5.8e-84 316.6 868 39.6
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 7.5e-84 316.2 942 45.4
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.3e-83 315.5 934 46.0
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.9e-83 314.3 883 49.5
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.7e-81 307.8 854 48.5
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 3.5e-81 307.4 969 47.4
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 4.6e-81 307.0 868 44.8
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.1e-79 302.4 945 47.2
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 4.3e-79 300.4 946 45.8
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.8e-77 295.0 909 49.5
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.1e-77 294.3 939 42.1
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.2e-76 292.4 959 46.9
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.5e-76 292.0 917 49.4
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.5e-76 292.0 916 45.3
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 1.1e-74 285.8 928 45.4
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 4.1e-74 283.9 969 44.4
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 3.0e-72 277.7 948 45.7
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 5.6e-71 273.5 937 45.3
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 4.7e-70 270.4 228 67.5
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.1e-69 269.2 232 66.8
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.1e-69 269.2 824 47.1
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.5e-68 265.4 302 56.0
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.0e-68 265.0 933 46.6
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.6e-68 264.6 306 54.6
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.6e-68 264.6 853 43.6
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 3.4e-68 264.2 275 58.5
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.2e-67 261.5 884 45.9
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 3.7e-67 260.8 883 46.0
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 6.4e-67 260.0 231 65.8
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-66 259.2 278 61.2
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.9e-66 258.5 940 46.0
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 9.2e-66 256.1 274 56.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 2.7e-65 254.6 274 59.5
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.7e-65 254.6 936 47.0
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 3.5e-65 254.2 234 63.2
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.3e-64 252.3 915 47.7
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.9e-64 250.8 284 57.7
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 6.6e-64 250.0 291 58.4
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 2.5e-63 248.1 285 55.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 6.2e-62 243.4 216 63.9
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.4e-61 242.3 213 63.8
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 8.9e-61 239.6 915 45.9
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 2.6e-60 238.0 953 44.6
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 7.6e-60 236.5 156 76.9
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 4.9e-59 233.8 303 53.8
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.9e-58 231.9 962 41.2
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.2e-57 229.2 142 80.3
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.2e-57 229.2 315 50.8
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 2.1e-57 228.4 290 53.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.5e-57 227.6 145 80.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 2.3e-56 224.9 313 54.3
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 9.6e-55 219.5 227 56.8
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 9.6e-55 219.5 134 80.6
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.6e-54 218.8 241 56.4
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.6e-54 218.8 241 56.4
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.1e-54 218.4 827 45.6
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 3.6e-54 217.6 304 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.4e-53 215.7 228 56.6
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.8e-53 215.3 298 50.7
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.0e-52 211.8 917 46.1
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 3.2e-50 204.5 131 76.3
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 5.4e-50 203.8 914 43.2
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 6.6e-48 196.8 173 63.0
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 8.7e-48 196.4 134 73.9
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.9e-47 195.3 884 43.7
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 5.6e-47 193.7 238 50.4
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 2.4e-45 188.3 894 43.2
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 5.3e-45 187.2 251 51.0
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 5.3e-45 187.2 914 42.2
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.2e-44 186.0 175 60.0
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 2.2e-43 181.8 833 43.3
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 4.9e-43 180.6 914 44.6
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 4.2e-42 177.6 939 42.9
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 3.9e-40 171.0 158 58.2
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 2.1e-38 165.2 214 47.7
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 6.4e-35 153.7 121 66.1
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 2.3e-32 145.2 134 60.4
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 6.5e-27 127.1 154 49.4
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 8.4e-27 126.7 173 46.2
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 1.4e-21 109.4 438 40.9
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.8e-21 109.0 207 39.1
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.0e-19 100.9 137 44.5
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 7.2e-18 97.1 76 67.1
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 6.7e-16 90.5 129 48.8
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 6.3e-14 84.0 57 71.9
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 2.5e-10 72.0 50 72.0
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 3.2e-10 71.6 389 38.6
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 3.9e-08 64.7 108 37.0
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 3.7e-06 58.2 53 54.7
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 3.7e-06 58.2 53 54.7


User provided reference genes

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