Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.2e-45 186.0 87 100.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 8.3e-39 163.3 85 89.4
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.9e-38 162.2 85 88.2
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.9e-38 162.2 82 87.8
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 2.4e-38 161.8 84 86.9
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.2e-38 161.4 85 88.2
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 3.2e-38 161.4 85 88.2
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 3.2e-38 161.4 85 88.2
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 4.1e-38 161.0 84 86.9
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 7.0e-38 160.2 84 85.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 1.2e-37 159.5 84 84.5
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.6e-37 159.1 85 87.1
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 2.0e-37 158.7 80 91.2
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.0e-37 158.7 80 91.2
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.0e-37 158.7 80 91.2
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.0e-37 158.7 80 91.2
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 2.0e-37 158.7 85 85.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.7e-37 158.3 79 91.1
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 3.5e-37 157.9 84 83.3
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 4.6e-37 157.5 85 84.7
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.7e-36 155.6 84 82.1
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 2.3e-36 155.2 84 82.1
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 3.0e-36 154.8 84 82.1
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 5.0e-36 154.1 84 83.3
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 5.0e-36 154.1 82 84.1
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 8.6e-36 153.3 84 81.0
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.1e-35 152.9 84 81.0
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.3e-35 151.4 93 74.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 3.3e-35 151.4 79 82.3
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 3.3e-35 151.4 84 82.1
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 4.3e-35 151.0 85 81.2
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 9.5e-35 149.8 85 82.4
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 9.5e-35 149.8 85 80.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 9.5e-35 149.8 85 80.0
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.2e-34 149.4 93 73.1
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.2e-34 149.4 85 80.0
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.6e-34 149.1 84 78.6
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.6e-34 149.1 85 80.0
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.6e-34 149.1 88 79.5
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.8e-34 148.3 73 93.2
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 3.6e-34 147.9 85 78.8
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 4.7e-34 147.5 87 77.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 4.7e-34 147.5 83 80.7
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 6.2e-34 147.1 87 75.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.1e-33 146.4 84 79.8
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.8e-33 145.6 85 78.8
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.0e-33 144.4 80 80.0
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.2e-33 144.1 76 82.9
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 5.2e-33 144.1 84 79.8
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 5.2e-33 144.1 80 80.0
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 5.2e-33 144.1 80 80.0
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 6.8e-33 143.7 80 78.8
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.8e-33 143.7 77 83.1
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 8.9e-33 143.3 85 77.6
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 8.9e-33 143.3 84 76.2
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.2e-32 142.9 85 75.3
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.2e-32 142.9 85 75.3
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.5e-32 142.5 87 77.0
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 1.5e-32 142.5 84 79.8
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.5e-32 142.5 84 78.6
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 2.0e-32 142.1 85 77.6
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.6e-32 141.7 84 78.6
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.6e-32 141.7 84 78.6
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 3.4e-32 141.4 86 73.3
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 3.4e-32 141.4 85 74.1
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 3.4e-32 141.4 85 74.1
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 3.4e-32 141.4 84 72.6
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 5.8e-32 140.6 84 73.8
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 7.5e-32 140.2 85 74.1
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 7.5e-32 140.2 85 74.1
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 7.5e-32 140.2 85 74.1
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 7.5e-32 140.2 83 72.3
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 9.8e-32 139.8 85 72.9
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 9.8e-32 139.8 84 77.4
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 9.8e-32 139.8 82 78.0
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 9.8e-32 139.8 84 76.2
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 9.8e-32 139.8 77 80.5
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.3e-31 139.4 82 75.6
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.7e-31 139.0 85 74.1
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.7e-31 139.0 76 81.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 77.4
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.2e-31 138.7 85 72.9
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.9e-31 138.3 84 73.8
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 3.7e-31 137.9 85 74.1
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.7e-31 137.9 84 76.2
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.7e-31 137.9 84 76.2
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 4.9e-31 137.5 85 72.9
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 4.9e-31 137.5 63 95.2
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 8.3e-31 136.7 79 77.2
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.1e-30 136.3 76 80.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.9e-30 135.6 82 74.4
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 3.2e-30 134.8 83 72.3
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 3.2e-30 134.8 69 87.0
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 3.2e-30 134.8 69 87.0
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 5.4e-30 134.0 89 73.0
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 5.4e-30 134.0 68 86.8
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.2e-29 132.9 83 69.9
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 1.2e-29 132.9 68 88.2
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.2e-29 132.9 85 72.9
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.2e-29 132.9 87 67.8
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.6e-29 132.5 94 64.9
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.1e-29 132.1 84 73.8
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.1e-29 132.1 68 83.8
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 2.1e-29 132.1 96 67.7
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.7e-29 131.7 84 76.2
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.5e-29 131.3 69 84.1
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 4.6e-29 131.0 74 79.7
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.0e-29 130.6 76 77.6
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.0e-28 129.8 97 62.9
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.3e-28 129.4 87 65.5
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 3.9e-28 127.9 84 71.4
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 8.6e-28 126.7 73 72.6
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 1.9e-27 125.6 85 68.2
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 2.5e-27 125.2 65 84.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.3e-27 124.8 77 67.5
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 3.3e-27 124.8 76 75.0
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 3.3e-27 124.8 114 54.4
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 5.6e-27 124.0 60 90.0
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 9.5e-27 123.2 78 65.4
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 9.5e-27 123.2 85 65.9
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.8e-26 121.7 85 63.5
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.6e-26 121.3 87 67.8
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 4.7e-26 120.9 85 64.7
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 8.9e-25 116.7 87 65.5
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 2.6e-24 115.2 97 58.8
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 5.8e-24 114.0 84 66.7
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 5.8e-24 114.0 53 88.7
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 7.5e-24 113.6 52 90.4
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 9.9e-24 113.2 87 63.2
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 2.2e-23 112.1 83 65.1
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.2e-23 112.1 73 74.0
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.9e-23 111.7 85 64.7
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 6.4e-23 110.5 66 75.8
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 6.4e-23 110.5 67 77.6
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 6.4e-23 110.5 71 69.0
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 6.4e-23 110.5 72 65.3
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 7.1e-22 107.1 54 85.2
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.6e-21 105.9 84 65.5
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 2.7e-21 105.1 72 56.9
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.7e-21 105.1 52 88.5
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 7.8e-21 103.6 71 57.7
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 7.8e-21 103.6 54 75.9
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.7e-20 102.4 52 88.5
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.0e-20 101.7 56 80.4
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 3.9e-20 101.3 83 54.2
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 3.3e-19 98.2 97 50.5
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.3e-19 98.2 69 69.6
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 2.8e-18 95.1 54 74.1
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 8.1e-18 93.6 99 50.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 1.5e-16 89.4 51 84.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 3.4e-16 88.2 72 59.7
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.9e-15 85.1 62 54.8
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 3.8e-15 84.7 59 66.1
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.5e-13 78.2 45 75.6
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 3.0e-12 75.1 57 56.1
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 1.1e-11 73.2 59 61.0
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.8e-09 65.9 58 46.6
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.9e-09 63.9 116 38.8
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 4.4e-08 61.2 60 41.7
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 2.9e-07 58.5 111 32.4


User provided reference genes

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