Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.0e-71 273.5 157 100.0
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.3e-61 240.0 157 83.4
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.3e-61 240.0 157 85.4
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 5.0e-50 201.4 159 67.3
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.0e-50 201.4 159 77.4
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.2e-49 198.7 140 76.4
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 3.6e-48 195.3 160 68.8
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 4.6e-48 194.9 158 70.9
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.0e-46 189.5 158 62.7
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.0e-46 189.5 160 65.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 3.3e-46 188.7 158 69.6
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.7e-45 186.4 160 64.4
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.8e-45 185.7 159 60.4
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.3e-45 184.5 158 68.4
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.4e-44 182.6 140 80.7
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.4e-44 182.6 139 66.9
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 5.3e-44 181.4 159 70.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 6.9e-44 181.0 160 73.1
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 9.1e-44 180.6 156 60.3
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-43 180.3 163 72.4
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-43 180.3 163 72.4
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-43 180.3 163 72.4
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 2.0e-43 179.5 158 70.3
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 5.0e-42 174.9 156 61.5
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.9e-41 172.9 161 67.7
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.5e-41 172.6 161 57.1
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.2e-41 172.2 153 61.4
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 5.5e-41 171.4 161 57.8
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 7.2e-41 171.0 158 57.6
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 7.2e-41 171.0 153 70.6
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 9.4e-41 170.6 159 71.1
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 9.4e-41 170.6 159 57.2
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.2e-40 170.2 149 61.1
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.6e-40 169.9 158 70.3
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-40 169.9 165 61.8
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.1e-40 169.5 160 59.4
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 2.1e-40 169.5 161 57.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.7e-40 168.3 153 68.6
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 6.1e-40 167.9 159 57.9
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 6.1e-40 167.9 159 57.9
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 6.1e-40 167.9 160 67.5
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.0e-39 167.2 160 59.4
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.0e-39 167.2 150 58.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.4e-39 166.8 160 58.8
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.4e-39 166.8 161 58.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.4e-39 166.8 157 70.1
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.3e-39 166.0 158 55.7
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 2.3e-39 166.0 156 58.3
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.9e-39 165.2 158 55.1
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.9e-39 165.2 154 55.8
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 6.7e-39 164.5 158 58.2
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 6.7e-39 164.5 155 55.5
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 8.8e-39 164.1 137 68.6
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.0e-38 162.9 159 67.3
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.6e-38 162.5 144 57.6
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 2.6e-38 162.5 159 58.5
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.3e-38 162.2 160 55.6
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 3.3e-38 162.2 159 67.3
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.4e-38 161.8 81 87.7
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 4.4e-38 161.8 158 56.3
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 5.7e-38 161.4 101 76.2
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 7.4e-38 161.0 159 56.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 9.7e-38 160.6 158 60.8
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 9.7e-38 160.6 158 54.4
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 9.7e-38 160.6 158 56.3
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.3e-37 160.2 158 55.1
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.7e-37 159.8 162 61.7
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.7e-37 159.8 80 87.5
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.2e-37 159.5 145 57.9
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.2e-37 159.5 94 74.5
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 2.2e-37 159.5 77 90.9
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.8e-37 159.1 138 60.1
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 3.7e-37 158.7 153 54.9
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 3.7e-37 158.7 158 60.8
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 3.7e-37 158.7 148 61.5
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 4.8e-37 158.3 102 73.5
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 6.3e-37 157.9 162 60.5
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.3e-37 157.9 102 74.5
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 6.3e-37 157.9 158 63.9
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 1.4e-36 156.8 135 60.7
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.4e-36 156.8 139 71.9
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.8e-36 156.4 158 59.5
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.4e-36 156.0 157 52.9
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.4e-36 156.0 158 63.3
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.1e-36 155.2 103 74.8
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 5.3e-36 154.8 156 53.2
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 5.3e-36 154.8 101 70.3
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 5.3e-36 154.8 158 64.6
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 9.1e-36 154.1 150 54.7
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 9.1e-36 154.1 128 61.7
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.2e-35 153.7 158 62.0
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.6e-35 152.5 155 65.8
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 2.6e-35 152.5 93 74.2
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 4.5e-35 151.8 157 63.1
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 4.5e-35 151.8 129 60.5
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 5.9e-35 151.4 158 64.6
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 5.9e-35 151.4 158 63.3
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.0e-34 148.3 160 65.0
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.0e-34 148.3 158 62.0
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 8.5e-34 147.5 157 57.3
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.5e-33 146.7 158 62.7
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.5e-33 146.7 141 60.3
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.5e-33 146.0 156 62.8
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.5e-33 146.0 153 60.8
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 2.5e-33 146.0 156 61.5
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.2e-33 145.6 153 60.1
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 7.2e-33 144.4 75 82.7
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.2e-32 143.7 150 52.0
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 3.6e-32 142.1 129 65.1
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 6.1e-32 141.4 135 69.6
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.2e-30 137.1 83 75.9
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 2.6e-30 136.0 107 80.4
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 7.5e-30 134.4 162 51.2
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.1e-28 129.0 89 67.4
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.2e-27 127.1 111 73.9
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.7e-27 125.9 170 47.6
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 7.7e-27 124.4 160 46.9
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 7.7e-27 124.4 100 60.0
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 2.5e-25 119.4 104 56.7
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.1e-24 116.3 158 46.2
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 8.0e-24 114.4 114 50.9
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.0e-23 114.0 52 94.2
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.0e-22 109.8 178 38.8
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 7.5e-22 107.8 52 84.6
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.7e-21 106.7 84 63.1
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.2e-19 100.5 158 40.5
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.6e-19 100.1 83 60.2
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.9e-18 95.9 82 78.0
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.5e-17 92.8 74 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 4.2e-17 92.0 102 46.1
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 6.1e-16 88.2 88 58.0
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 6.1e-16 88.2 128 40.6
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 2.3e-15 86.3 159 41.5
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.2e-14 84.0 74 50.0
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 2.0e-14 83.2 89 48.3
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.8e-13 79.3 98 63.3
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.8e-12 76.6 82 43.9
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.7e-10 70.1 84 42.9
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 5.0e-10 68.6 42 69.0
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 1.1e-09 67.4 41 70.7
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 4.7e-08 62.0 38 68.4
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.8e-07 60.1 46 58.7
MCO15G631 Micromonas commoda HOM05D005372 ORTHO05D006593 7.5e-06 54.7 104 34.6


User provided reference genes

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