Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 0.0e+00 2497.2 1349 100.0
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 0.0e+00 1466.8 1373 64.6
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 0.0e+00 1404.8 1384 63.2
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 0.0e+00 1338.2 1385 60.4
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 0.0e+00 1313.9 1404 59.9
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 0.0e+00 1297.3 1405 58.7
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 0.0e+00 1275.8 1413 58.5
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 0.0e+00 1263.4 1391 58.7
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 7.3e-283 978.0 1554 48.5
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 1.2e-272 944.1 1529 48.6
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 4.0e-249 865.9 1668 44.2
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 8.4e-247 858.2 1468 47.0
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 4.2e-246 855.9 1536 43.9
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 5.6e-243 845.5 1508 44.0
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 7.6e-240 835.1 1522 45.8
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 1.9e-238 830.5 984 60.0
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 2.5e-230 803.5 1555 43.6
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 3.2e-230 803.1 1475 46.5
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-224 783.9 1637 42.9
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-224 783.9 1637 42.9
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-224 783.9 1637 42.9
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.0e-220 771.5 1414 43.8
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 8.8e-220 768.5 1491 43.0
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.9e-219 767.3 1451 46.1
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 4.3e-219 766.1 1431 45.0
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.4e-217 761.1 1443 44.0
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 8.5e-215 751.9 1460 42.9
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.0e-212 745.0 1420 43.5
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.1e-211 741.5 1400 43.7
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 3.3e-211 740.0 1552 42.5
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.6e-208 730.3 1422 43.1
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 3.4e-208 729.9 644 70.3
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 4.5e-192 676.4 1410 44.2
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 1.4e-188 664.8 1412 43.4
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 1.8e-185 654.4 1520 42.0
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.2e-181 641.7 1500 42.2
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.0e-180 638.6 1390 42.4
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.2e-180 636.3 1431 40.7
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.1e-177 628.6 1525 39.6
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 2.4e-177 627.5 1745 37.7
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 9.5e-174 615.5 1392 41.5
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 3.2e-169 600.5 1408 41.3
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 9.2e-169 599.0 1771 37.3
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 3.3e-166 590.5 1753 36.1
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.8e-165 587.4 1405 41.5
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 2.3e-164 584.3 1403 43.0
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 1.3e-159 568.5 1506 38.2
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 1.7e-159 568.2 1497 38.9
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 6.6e-159 566.2 1396 40.5
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 8.6e-159 565.8 1410 43.0
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 4.4e-155 553.5 1437 37.6
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 6.4e-154 549.7 1361 37.2
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.4e-153 548.5 1525 37.7
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 3.2e-153 547.4 1688 38.5
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 6.6e-151 539.7 1412 40.4
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 8.6e-151 539.3 1516 36.6
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.5e-150 538.5 1445 38.0
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 7.3e-150 536.2 1469 35.9
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 1.1e-145 522.3 1445 37.0
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 4.6e-144 516.9 378 73.3
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 2.3e-143 514.6 1104 39.7
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 6.6e-143 513.1 1198 39.4
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.2e-139 502.3 1484 38.1
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 4.4e-139 500.4 1505 36.9
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 7.6e-139 499.6 1391 38.4
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 4.6e-136 490.3 1397 39.1
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.5e-134 484.6 1157 38.1
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 5.6e-134 483.4 1390 39.4
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 9.9e-123 446.0 1115 42.3
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 6.4e-122 443.4 1451 36.3
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.9e-121 441.8 1454 34.1
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 4.2e-121 440.7 1450 35.2
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 7.1e-121 439.9 1446 34.3
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 1.1e-116 426.0 1409 34.6
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 1.8e-116 425.2 1426 35.3
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 4.5e-115 420.6 1403 34.4
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 2.7e-112 411.4 1406 33.9
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 6.7e-111 406.8 1371 33.3
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 6.1e-104 383.6 1452 33.3
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 7.9e-104 383.3 683 48.6
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 8.2e-101 373.2 1184 37.3
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.0e-99 368.6 1354 34.0
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.6e-96 357.8 1027 36.2
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.0e-95 354.8 1109 37.5
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 7.4e-94 350.1 1054 34.8
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 9.1e-92 343.2 1561 30.2
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.2e-90 338.6 379 59.4
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.1e-89 336.3 1683 31.8
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 1.6e-88 332.4 1148 34.0
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 2.6e-86 325.1 1376 31.5
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 5.3e-84 317.4 1121 31.8
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 5.7e-78 297.4 238 66.8
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 4.0e-71 274.6 171 73.7
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 7.0e-68 263.8 766 35.5
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.3e-66 259.6 1198 30.0
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.0e-63 250.0 1122 32.1
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 3.0e-63 248.4 140 79.3
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 4.5e-59 234.6 1403 29.8
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.5e-54 219.5 471 40.1
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 1.7e-53 216.1 1006 30.7
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 5.4e-52 211.1 657 33.9
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 7.8e-51 207.2 1036 28.5
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.6e-50 204.1 101 89.1
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 1.1e-49 203.4 179 56.4
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 1.2e-46 193.4 103 77.7
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 3.4e-46 191.8 711 38.3
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 4.4e-46 191.4 169 64.5
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.3e-45 189.9 686 30.9
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 7.1e-44 184.1 324 41.4
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 9.2e-44 183.7 362 37.8
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 1.4e-39 169.9 933 34.2
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 2.3e-39 169.1 178 51.7
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 5.8e-38 164.5 185 48.6
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 6.4e-37 161.0 567 30.5
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 4.6e-35 154.8 195 45.6
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 3.0e-34 152.1 135 55.6
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 6.6e-34 151.0 121 60.3
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.2e-30 140.2 72 83.3
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.2e-30 140.2 72 83.3
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 5.6e-25 121.3 669 30.5
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 2.8e-24 119.0 113 57.5
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.1e-23 117.1 813 26.8
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.2e-19 103.6 94 56.4
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 1.1e-15 90.5 190 28.9
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 5.3e-15 88.2 131 32.8
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 6.9e-15 87.8 140 27.1
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 5.8e-14 84.7 115 33.9
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 7.6e-14 84.3 114 36.0
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 2.9e-13 82.4 196 35.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 3.8e-13 82.0 96 37.5
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 4.9e-13 81.6 158 38.6
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 6.4e-13 81.3 448 26.6
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 7.1e-12 77.8 253 28.9
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 6.2e-08 64.7 164 34.1
Psat7g193760 Pisum sativum HOM05D005457 ORTHO05D006350 6.2e-08 64.7 251 34.3
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.4e-07 63.5 43 65.1
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 3.1e-07 62.4 92 40.2


User provided reference genes

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