Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G064400 Prunus persica HOM05D000292 ORTHO05D021045 2.1e-39 165.2 85 100.0
RcHm_v2.0_Chr6g0278351 Rosa chinensis HOM05D000292 ORTHO05D000172 1.1e-14 83.2 82 51.2
FAN21G3664 Fragaria x ananassa HOM05D000292 ORTHO05D000172 9.0e-14 80.1 69 60.9
MD11G1083400 Malus domestica HOM05D000292 ORTHO05D000172 7.7e-13 77.0 64 62.5
RcHm_v2.0_Chr5g0067751 Rosa chinensis HOM05D000292 ORTHO05D000172 7.7e-13 77.0 64 59.4
FvH4_3g37601 Fragaria vesca HOM05D000292 ORTHO05D000172 1.0e-12 76.6 69 58.0
FAN21G4040 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.3e-12 76.3 69 58.0
Prupe.6G064000 Prunus persica HOM05D000292 ORTHO05D000172 1.7e-12 75.9 69 59.4
Prupe.6G064300 Prunus persica HOM05D000292 ORTHO05D000172 3.8e-12 74.7 70 58.6
Prupe.6G064100 Prunus persica HOM05D000292 ORTHO05D000172 5.0e-12 74.3 66 59.1
COL.COLO4_19075 Corchorus olitorius HOM05D000292 ORTHO05D000172 6.5e-12 73.9 66 57.6
FvH4_3g37610 Fragaria vesca HOM05D000292 ORTHO05D000172 8.5e-12 73.6 69 58.0
MD11G1083700 Malus domestica HOM05D000292 ORTHO05D000172 8.5e-12 73.6 68 57.4
MD11G1083900 Malus domestica HOM05D000292 ORTHO05D000172 8.5e-12 73.6 68 57.4
FvH4_3g37640 Fragaria vesca HOM05D000292 ORTHO05D000172 1.9e-11 72.4 64 54.7
FAN11G2128 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.9e-11 72.4 64 54.7
RcHm_v2.0_Chr5g0067471 Rosa chinensis HOM05D000292 ORTHO05D000172 3.2e-11 71.6 74 54.1
COL.COLO4_19074 Corchorus olitorius HOM05D000292 ORTHO05D000172 4.2e-11 71.2 70 54.3
FvH4_3g37590 Fragaria vesca HOM05D000292 ORTHO05D000172 7.2e-11 70.5 74 54.1
RcHm_v2.0_Chr5g0067521 Rosa chinensis HOM05D000292 ORTHO05D000172 9.4e-11 70.1 74 54.1
RcHm_v2.0_Chr5g0067861 Rosa chinensis HOM05D000292 ORTHO05D000172 9.4e-11 70.1 65 56.9
FAN11G2207 Fragaria x ananassa HOM05D000292 ORTHO05D000172 2.1e-10 68.9 68 54.4
MD11G1084000 Malus domestica HOM05D000292 ORTHO05D000172 2.7e-10 68.6 63 55.6
Thecc.09G308900 Theobroma cacao HOM05D000292 ORTHO05D000172 2.7e-10 68.6 63 57.1
Dinv17078 Davidia involucrata HOM05D000292 ORTHO05D000172 3.6e-10 68.2 63 49.2
Dinv43022 Davidia involucrata HOM05D000292 ORTHO05D000172 3.6e-10 68.2 63 49.2
Dinv43076 Davidia involucrata HOM05D000292 ORTHO05D000172 3.6e-10 68.2 63 49.2
Rhsim11G0123400 Rhododendron simsii HOM05D000292 ORTHO05D000172 6.1e-10 67.4 70 48.6
FAN11G3875 Fragaria x ananassa HOM05D000292 ORTHO05D000172 7.9e-10 67.0 89 47.2
MD03G1079800 Malus domestica HOM05D000292 ORTHO05D000172 1.0e-09 66.6 62 53.2
MD11G1084300 Malus domestica HOM05D000292 ORTHO05D000172 1.0e-09 66.6 59 59.3
Prupe.6G063900 Prunus persica HOM05D000292 ORTHO05D000172 1.0e-09 66.6 69 50.7
MD03G1079100 Malus domestica HOM05D000292 ORTHO05D021045 1.8e-09 65.9 80 47.5
CSS0014923 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 3.0e-09 65.1 68 47.1
RcHm_v2.0_Chr5g0067801 Rosa chinensis HOM05D000292 ORTHO05D000172 3.0e-09 65.1 69 53.6
CSS0021970 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 3.9e-09 64.7 63 52.4
Duzib168G0276 Durio zibethinus HOM05D000292 ORTHO05D000172 3.9e-09 64.7 63 52.4
FvH4_6g48430 Fragaria vesca HOM05D000292 ORTHO05D000172 5.1e-09 64.3 69 52.2
MD03G1079600 Malus domestica HOM05D000292 ORTHO05D000172 6.7e-09 63.9 68 47.1
RcHm_v2.0_Chr5g0067841 Rosa chinensis HOM05D000292 ORTHO05D000172 6.7e-09 63.9 69 53.6
Dinv14485 Davidia involucrata HOM05D000292 ORTHO05D000172 8.8e-09 63.5 60 53.3
CSS0004000 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 1.1e-08 63.2 63 50.8
Potri.001G247200 Populus trichocarpa HOM05D000292 ORTHO05D000172 1.5e-08 62.8 64 50.0
Rhsim11G0123200 Rhododendron simsii HOM05D000292 ORTHO05D000172 1.5e-08 62.8 69 46.4
RcHm_v2.0_Chr3g0490491 Rosa chinensis HOM05D000292 ORTHO05D000172 1.5e-08 62.8 69 52.2
MD11G1083300 Malus domestica HOM05D000292 ORTHO05D000172 2.5e-08 62.0 77 42.9
RcHm_v2.0_Chr5g0067831 Rosa chinensis HOM05D000292 ORTHO05D021045 2.5e-08 62.0 64 53.1
RcHm_v2.0_Chr5g0067691 Rosa chinensis HOM05D000292 ORTHO05D000172 3.3e-08 61.6 69 50.7
CSS0007252 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 5.7e-08 60.8 60 48.3
CSS0027918 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 5.7e-08 60.8 60 48.3
Duzib170G0100 Durio zibethinus HOM05D000292 ORTHO05D000172 5.7e-08 60.8 63 50.8
MD03G1079300 Malus domestica HOM05D000292 ORTHO05D000172 5.7e-08 60.8 68 47.1
RcHm_v2.0_Chr5g0055481 Rosa chinensis HOM05D000292 ORTHO05D000172 5.7e-08 60.8 69 50.7
vmacro01716 Vaccinium macrocarpon HOM05D000292 ORTHO05D000172 5.7e-08 60.8 69 46.4
MD03G1079500 Malus domestica HOM05D000292 ORTHO05D000172 7.4e-08 60.5 62 50.0
RcHm_v2.0_Chr5g0067571 Rosa chinensis HOM05D000292 ORTHO05D000172 7.4e-08 60.5 69 50.7
FAN14G5187 Fragaria x ananassa HOM05D000292 ORTHO05D000172 9.7e-08 60.1 69 49.3
Potri.001G247300 Populus trichocarpa HOM05D000292 ORTHO05D000172 9.7e-08 60.1 64 48.4
RcHm_v2.0_Chr5g0068351 Rosa chinensis HOM05D000292 ORTHO05D000172 9.7e-08 60.1 69 50.7
COL.COLO4_19076 Corchorus olitorius HOM05D000292 ORTHO05D000172 1.3e-07 59.7 68 44.1
MD03G1079700 Malus domestica HOM05D000292 ORTHO05D000172 1.3e-07 59.7 68 47.1
Prupe.6G063700 Prunus persica HOM05D000292 ORTHO05D000172 1.3e-07 59.7 68 44.1
Cc02_g23130 Coffea canephora HOM05D000292 ORTHO05D000172 1.7e-07 59.3 63 50.8
MD11G1083600 Malus domestica HOM05D000292 ORTHO05D000172 1.7e-07 59.3 68 47.1
Thecc.09G308800 Theobroma cacao HOM05D000292 ORTHO05D000172 1.7e-07 59.3 68 44.1
MSTRG.6572 Avicennia marina HOM05D000292 ORTHO05D000172 2.2e-07 58.9 63 47.6
Rhsim11G0123500 Rhododendron simsii HOM05D000292 ORTHO05D000172 2.2e-07 58.9 69 44.9
Glyma.07G137500 Glycine max HOM05D000292 ORTHO05D000172 2.8e-07 58.5 62 46.8
Sabra16G0150200 Salix brachista HOM05D000292 ORTHO05D000172 2.8e-07 58.5 69 44.9
Lj5A265G36 Lonicera japonica HOM05D000292 ORTHO05D000172 3.7e-07 58.2 69 42.0
Medtr7g066350 Medicago truncatula HOM05D000292 ORTHO05D000172 3.7e-07 58.2 61 49.2
COL.COLO4_19078 Corchorus olitorius HOM05D000292 ORTHO05D000172 4.8e-07 57.8 62 48.4
COL.COLO4_19077 Corchorus olitorius HOM05D000292 ORTHO05D000172 6.3e-07 57.4 63 47.6
Dinv19404 Davidia involucrata HOM05D000292 ORTHO05D000172 6.3e-07 57.4 63 46.0
FvH4_3g37580 Fragaria vesca HOM05D000292 ORTHO05D000172 6.3e-07 57.4 48 54.2
Aqoxy1G00745 Aquilegia oxysepala HOM05D000292 ORTHO05D000172 8.2e-07 57.0 58 48.3
DCAR_015469 Daucus carota HOM05D000292 ORTHO05D000172 8.2e-07 57.0 65 43.1
Dinv19406 Davidia involucrata HOM05D000292 ORTHO05D000172 1.4e-06 56.2 63 44.4
TAR636G0285 Trochodendron aralioides HOM05D000292 ORTHO05D000172 1.8e-06 55.8 59 47.5
Actinidia39005 Actinidia chinensis HOM05D000292 ORTHO05D000172 2.4e-06 55.5 63 42.9
CSS0002374 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 2.4e-06 55.5 60 45.0
CSS0008428 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 2.4e-06 55.5 60 45.0
Gorai.003G125600 Gossypium raimondii HOM05D000292 ORTHO05D000172 2.4e-06 55.5 63 44.4
Glyma.18G194700 Glycine max HOM05D000292 ORTHO05D000172 3.1e-06 55.1 62 50.0
Glyma.18G194800 Glycine max HOM05D000292 ORTHO05D000172 3.1e-06 55.1 62 50.0
Lj5A265T31 Lonicera japonica HOM05D000292 ORTHO05D000172 3.1e-06 55.1 69 39.1
Rhsim11G0123100 Rhododendron simsii HOM05D000292 ORTHO05D000172 3.1e-06 55.1 57 47.4
Gohir.A03G047800 Gossypium hirsutum HOM05D000292 ORTHO05D000172 4.1e-06 54.7 63 44.4
TPR.G2275 Trifolium pratense HOM05D000292 ORTHO05D000172 4.1e-06 54.7 61 42.6
TAR636G2636 Trochodendron aralioides HOM05D000292 ORTHO05D000172 4.1e-06 54.7 64 45.3
Thecc.09G308600 Theobroma cacao HOM05D000292 ORTHO05D000172 5.3e-06 54.3 64 45.3
Dinv20936 Davidia involucrata HOM05D000292 ORTHO05D000172 6.9e-06 53.9 60 41.7
Dinv21007 Davidia involucrata HOM05D000292 ORTHO05D000172 6.9e-06 53.9 60 41.7
Dinv34322 Davidia involucrata HOM05D000292 ORTHO05D000172 6.9e-06 53.9 53 47.2
MBI07_g46901_MAGBIO Magnolia biondii HOM05D000292 ORTHO05D000172 6.9e-06 53.9 62 40.3
Medtr7g066280 Medicago truncatula HOM05D000292 ORTHO05D000172 6.9e-06 53.9 61 47.5
DCAR_015466 Daucus carota HOM05D000292 ORTHO05D000172 9.1e-06 53.5 60 45.0
Rhsim13G0074700 Rhododendron simsii HOM05D000292 ORTHO05D000172 9.1e-06 53.5 62 40.3
RcHm_v2.0_Chr5g0067441 Rosa chinensis HOM05D000292 ORTHO05D000172 9.1e-06 53.5 48 52.1
TPR.G1577 Trifolium pratense HOM05D000292 ORTHO05D000172 9.1e-06 53.5 61 42.6
TAR636G2896 Trochodendron aralioides HOM05D000292 ORTHO05D000172 9.1e-06 53.5 60 46.7
TAR636G3084 Trochodendron aralioides HOM05D000292 ORTHO05D000172 9.1e-06 53.5 65 43.1


User provided reference genes

Program Settings