Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 9.4e-92 340.1 165 100.0
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 3.8e-85 318.2 165 90.9
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 6.5e-85 317.4 165 90.9
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 8.8e-82 307.0 159 90.6
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 4.1e-79 298.1 159 84.3
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 7.0e-79 297.4 159 86.2
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.7e-78 295.4 159 86.8
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 7.7e-78 293.9 159 84.3
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 7.7e-78 293.9 159 86.8
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 2.2e-77 292.4 159 86.8
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.9e-77 292.0 159 84.3
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.9e-77 292.0 159 86.2
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.8e-77 291.6 159 83.6
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 6.5e-77 290.8 159 84.3
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 6.5e-77 290.8 159 83.6
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 6.5e-77 290.8 159 84.9
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.2e-76 288.5 159 85.5
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 3.2e-76 288.5 159 83.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.7e-75 285.4 159 81.8
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.7e-75 285.4 159 81.8
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 6.1e-75 284.3 159 81.1
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.4e-73 278.1 159 78.0
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 5.7e-73 277.7 159 79.2
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.2e-72 275.8 159 78.6
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 4.9e-72 274.6 143 88.1
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 4.9e-72 274.6 159 78.0
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 5.4e-71 271.2 159 78.0
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.2e-70 270.0 159 79.9
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.0e-70 269.2 150 82.7
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 4.5e-70 268.1 159 75.5
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 7.7e-70 267.3 159 78.6
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.0e-69 266.9 159 75.5
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.0e-69 266.9 148 80.4
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-69 266.5 159 76.7
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.3e-69 266.5 150 80.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.3e-69 266.5 150 80.7
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.7e-69 266.2 159 75.5
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.3e-69 265.8 159 78.0
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 5.0e-69 264.6 159 76.1
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.6e-69 264.2 148 79.7
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 6.6e-69 264.2 150 81.3
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 6.6e-69 264.2 159 74.2
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 8.6e-69 263.8 159 78.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.1e-68 263.5 159 73.6
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.9e-68 262.7 159 74.2
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.5e-68 262.3 159 77.4
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.3e-68 261.9 143 82.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 4.3e-68 261.5 159 73.6
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 9.5e-68 260.4 159 73.0
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 9.5e-68 260.4 159 73.0
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 9.5e-68 260.4 151 78.1
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.2e-67 260.0 159 73.0
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.2e-67 260.0 159 73.6
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.2e-67 260.0 159 73.0
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.2e-67 260.0 159 73.0
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.2e-67 260.0 159 74.8
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.6e-67 259.6 145 79.3
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.8e-67 258.8 159 75.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 2.8e-67 258.8 158 77.2
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 3.6e-67 258.5 159 74.2
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.6e-67 258.5 159 73.0
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.6e-67 258.5 145 80.0
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.6e-67 258.5 145 80.0
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.6e-67 258.5 159 73.0
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 4.7e-67 258.1 159 73.0
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 4.7e-67 258.1 159 71.1
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 4.7e-67 258.1 159 74.8
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.5e-65 253.1 159 72.3
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.0e-65 252.7 159 74.8
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.4e-65 251.9 145 77.9
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.3e-64 250.0 159 75.5
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.7e-64 249.6 148 76.4
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.9e-64 248.8 148 75.0
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.9e-64 248.8 148 75.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.7e-64 248.4 145 77.2
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-64 248.4 148 75.0
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 8.3e-64 247.3 144 77.8
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-63 246.9 148 75.7
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 5.4e-63 244.6 161 72.7
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 5.4e-63 244.6 161 72.7
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 7.0e-63 244.2 161 72.7
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 9.2e-63 243.8 161 72.7
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.2e-62 243.4 142 77.5
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.5e-62 241.9 159 70.4
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 3.5e-62 241.9 145 74.5
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 4.6e-62 241.5 161 71.4
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 5.9e-62 241.1 161 72.0
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 7.8e-62 240.7 161 72.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 7.8e-62 240.7 149 74.5
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.0e-61 240.4 135 78.5
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.7e-61 239.6 137 77.4
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.3e-61 239.2 174 67.2
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.3e-61 239.2 159 70.4
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 3.9e-61 238.4 157 68.2
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.6e-61 237.3 137 77.4
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.1e-60 236.9 160 68.1
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.5e-60 236.5 144 76.4
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.5e-60 236.5 161 69.6
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.5e-60 235.7 161 70.8
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 4.3e-60 235.0 145 73.1
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 4.3e-60 235.0 145 73.1
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 7.3e-60 234.2 158 68.4
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 9.5e-60 233.8 161 69.6
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.8e-59 232.3 142 73.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 4.7e-59 231.5 161 68.9
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 2.3e-58 229.2 159 66.0
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 3.1e-58 228.8 162 67.9
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 4.4e-57 224.9 165 66.1
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.9e-56 221.5 135 74.1
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 6.4e-56 221.1 132 73.5
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 7.0e-55 217.6 159 67.3
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.7e-53 213.0 120 79.2
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 3.0e-53 212.2 140 67.1
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.6e-51 206.5 159 57.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.3e-50 202.6 149 68.5
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.2e-49 200.3 159 61.6
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.9e-48 194.9 159 57.2
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 6.4e-48 194.5 105 85.7
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.4e-47 192.6 159 56.6
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 6.8e-42 174.5 159 57.9
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.4e-40 167.5 119 65.5
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.9e-39 166.4 145 57.2
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 4.1e-39 165.2 103 74.8
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.6e-38 161.8 120 63.3
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 7.8e-38 161.0 122 59.8
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.0e-37 160.6 159 52.2
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.3e-37 160.2 159 51.6
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-35 152.5 171 50.9
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 3.6e-35 152.1 159 49.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-35 151.8 171 50.9
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 8.1e-35 151.0 160 50.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 4.0e-34 148.7 125 56.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.2e-32 142.9 160 46.2
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.6e-30 136.7 86 72.1
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.6e-30 135.2 138 54.3
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.0e-25 119.8 140 43.6
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.3e-21 107.1 69 79.7
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 3.8e-16 89.0 63 63.5
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.0e-13 80.9 122 37.7
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 5.1e-13 78.6 53 69.8
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 4.3e-12 75.5 62 62.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.4e-10 70.5 49 65.3
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.0e-09 66.6 58 55.2
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 8.4e-08 61.2 46 60.9
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 9.3e-07 57.8 39 66.7


User provided reference genes

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