Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 2.0e-248 862.1 470 100.0
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 7.8e-216 753.8 553 75.0
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 2.5e-198 695.7 554 69.0
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 7.6e-195 684.1 575 66.3
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 2.8e-189 665.6 564 64.9
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 1.1e-188 663.7 553 64.9
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 2.0e-187 659.4 554 66.6
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 8.4e-186 654.1 565 61.6
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 2.1e-184 649.4 571 63.0
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 8.7e-183 644.0 543 62.4
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 1.9e-182 642.9 554 64.1
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.6e-181 638.6 560 63.0
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 4.5e-179 631.7 565 62.3
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 4.9e-178 628.2 561 60.4
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 4.2e-177 625.2 556 59.7
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 7.1e-177 624.4 528 64.6
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.6e-176 623.2 550 62.7
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 4.6e-176 621.7 563 59.5
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 1.3e-175 620.2 561 60.8
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 1.8e-175 619.8 555 61.6
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 2.3e-175 619.4 554 62.1
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 3.9e-175 618.6 558 60.6
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 5.1e-175 618.2 569 60.3
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 1.5e-174 616.7 550 61.8
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 5.6e-174 614.8 555 63.8
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 5.6e-174 614.8 548 60.2
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 7.4e-174 614.4 561 58.6
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 9.6e-174 614.0 544 63.2
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 9.6e-174 614.0 558 58.4
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 2.8e-173 612.5 559 61.4
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 4.8e-173 611.7 566 59.7
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 4.8e-173 611.7 563 58.6
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 8.1e-173 610.9 558 60.4
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 1.8e-172 609.8 550 62.4
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 2.4e-172 609.4 550 62.0
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 5.3e-172 608.2 557 61.0
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.5e-171 606.7 578 62.5
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 2.0e-171 606.3 566 60.4
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 2.0e-171 606.3 549 61.0
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 7.6e-171 604.4 564 58.5
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 9.9e-171 604.0 520 58.7
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 3.8e-170 602.1 628 57.0
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 3.8e-170 602.1 628 57.0
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 8.4e-170 600.9 555 59.8
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 1.9e-169 599.7 558 60.9
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 2.5e-169 599.4 555 58.9
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 7.1e-169 597.8 542 58.9
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.6e-168 596.7 542 57.7
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 2.7e-168 595.9 563 57.5
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 1.8e-167 593.2 553 60.8
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 2.3e-167 592.8 524 61.6
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 5.1e-167 591.7 557 57.1
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 1.5e-166 590.1 523 61.4
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 1.9e-166 589.7 567 57.0
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.9e-166 589.7 557 59.8
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 3.3e-166 589.0 572 55.9
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 5.6e-166 588.2 492 63.8
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 7.4e-166 587.8 513 60.6
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 6.2e-165 584.7 547 59.4
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 1.1e-161 573.9 555 60.7
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 1.4e-161 573.5 563 58.4
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 5.5e-161 571.6 543 56.4
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 1.0e-159 567.4 533 55.2
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 5.1e-159 565.1 523 56.2
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 9.7e-158 560.8 533 56.8
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 4.2e-153 545.4 651 48.2
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 2.7e-152 542.7 554 54.9
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 2.0e-150 536.6 554 52.9
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 2.5e-150 536.2 551 55.2
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 1.7e-149 533.5 478 56.1
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 2.8e-149 532.7 465 60.0
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 4.5e-147 525.4 482 56.8
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 1.7e-146 523.5 421 61.3
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 6.5e-146 521.5 554 50.4
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 7.2e-145 518.1 486 60.5
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 1.0e-143 514.2 485 54.4
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 3.9e-143 512.3 554 51.1
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 8.8e-143 511.1 560 51.8
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 8.8e-143 511.1 495 57.2
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 1.5e-142 510.4 489 55.6
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 1.5e-142 510.4 489 55.6
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 2.0e-142 510.0 485 54.6
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 1.5e-139 500.4 554 51.4
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.5e-139 500.4 568 52.5
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 3.5e-139 499.2 491 54.6
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 3.5e-139 499.2 491 54.6
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 5.0e-138 495.4 552 51.6
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 6.5e-138 495.0 490 54.5
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.4e-137 493.8 492 52.0
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 9.4e-137 491.1 489 53.8
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 2.7e-136 489.6 490 53.5
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 6.1e-136 488.4 440 53.9
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 3.9e-135 485.7 563 51.5
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 9.1e-132 474.6 434 52.3
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 6.7e-127 458.4 556 47.3
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.7e-126 455.3 372 64.2
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 6.1e-120 435.3 451 51.0
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 2.0e-110 403.7 467 45.4
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 6.3e-109 398.7 488 42.8
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 7.5e-102 375.2 439 43.7
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 1.5e-89 334.3 546 39.6
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 4.3e-89 332.8 469 42.6
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 4.2e-68 263.1 256 55.9
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 5.4e-68 262.7 186 67.7
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.5e-65 254.6 266 55.3
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 4.9e-53 213.0 141 66.0
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.6e-48 198.0 190 57.4
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.8e-47 194.5 105 83.8
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 3.5e-43 180.3 134 71.6
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 1.1e-28 132.1 106 60.4
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.2e-27 128.6 144 52.1
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.0e-26 125.6 94 60.6
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 1.0e-26 125.6 144 51.4
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 8.8e-26 122.5 75 72.0
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 2.2e-21 107.8 431 24.6
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 3.8e-21 107.1 135 48.9
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.0e-13 82.4 68 60.3
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 4.2e-12 77.0 221 29.0
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.5e-12 76.6 40 85.0
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 5.4e-07 60.1 42 59.5
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.2e-06 58.9 36 75.0


User provided reference genes

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