Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G052600 Prunus persica HOM05D006841 ORTHO05D008607 5.3e-287 990.3 501 100.0
MD11G1066200 Malus domestica HOM05D006841 ORTHO05D008607 3.6e-259 897.9 501 89.8
MD03G1062600 Malus domestica HOM05D006841 ORTHO05D008607 2.5e-257 891.7 501 89.4
RcHm_v2.0_Chr5g0070721 Rosa chinensis HOM05D006841 ORTHO05D008607 6.5e-245 850.5 501 85.6
FAN11G0941 Fragaria x ananassa HOM05D006841 ORTHO05D008607 1.0e-234 816.6 494 83.6
FvH4_3g39290 Fragaria vesca HOM05D006841 ORTHO05D008607 3.0e-234 815.1 501 82.8
FAN21G2904 Fragaria x ananassa HOM05D006841 ORTHO05D008607 4.0e-234 814.7 501 82.6
FAN25G3694 Fragaria x ananassa HOM05D006841 ORTHO05D008607 4.0e-234 814.7 501 82.6
Dinv28672 Davidia involucrata HOM05D006841 ORTHO05D008607 2.8e-224 781.9 494 79.8
CiPaw.14G056400 Carya illinoinensis HOM05D006841 ORTHO05D008607 1.1e-223 780.0 515 77.5
Potri.009G075200 Populus trichocarpa HOM05D006841 ORTHO05D008607 5.9e-222 774.2 506 76.9
CSS0042618 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 6.5e-221 770.8 507 75.5
Sabra09G0057100 Salix brachista HOM05D006841 ORTHO05D008607 7.2e-220 767.3 506 76.3
Thecc.09G353800 Theobroma cacao HOM05D006841 ORTHO05D008607 7.2e-220 767.3 506 76.1
TAR369G0096 Trochodendron aralioides HOM05D006841 ORTHO05D008607 3.0e-218 761.9 505 76.0
COL.COLO4_11072 Corchorus olitorius HOM05D006841 ORTHO05D008607 6.8e-218 760.8 510 75.5
Atru.chr3.4145 Acer truncatum HOM05D006841 ORTHO05D008607 2.0e-217 759.2 504 75.6
Manes.02G217600 Manihot esculenta HOM05D006841 ORTHO05D008607 1.3e-216 756.5 511 75.7
CANSAT54G0320 Cannabis sativa HOM05D006841 ORTHO05D008607 2.2e-216 755.7 514 76.3
Duzib170G1072 Durio zibethinus HOM05D006841 ORTHO05D008607 2.8e-216 755.4 506 75.1
Glyma.18G059800 Glycine max HOM05D006841 ORTHO05D008607 2.8e-216 755.4 512 74.6
PGR102G0989 Punica granatum HOM05D006841 ORTHO05D008607 3.7e-216 755.0 512 74.2
Ciclev10028251m.g Citrus clementina HOM05D006841 ORTHO05D008607 9.2e-215 750.4 467 79.9
Phvul.006G071400 Phaseolus vulgaris HOM05D006841 ORTHO05D008607 1.2e-214 750.0 476 78.2
CiPaw.13G073200 Carya illinoinensis HOM05D006841 ORTHO05D008607 2.7e-214 748.8 465 80.0
Actinidia34467 Actinidia chinensis HOM05D006841 ORTHO05D008607 3.5e-214 748.4 509 74.5
TAR636G1839 Trochodendron aralioides HOM05D006841 ORTHO05D008607 4.5e-214 748.0 467 79.2
Gorai.009G112400 Gossypium raimondii HOM05D006841 ORTHO05D008607 5.9e-214 747.7 505 74.7
Duzib168G0722 Durio zibethinus HOM05D006841 ORTHO05D008607 7.8e-214 747.3 506 74.7
Gohir.A05G108000 Gossypium hirsutum HOM05D006841 ORTHO05D008607 1.3e-213 746.5 505 74.3
arahy.Tifrunner.gnm1.ann1.1QT3IR Arachis hypogaea HOM05D006841 ORTHO05D008607 6.6e-213 744.2 494 76.1
arahy.Tifrunner.gnm1.ann1.UR06JS Arachis hypogaea HOM05D006841 ORTHO05D008607 8.6e-213 743.8 477 77.4
Haze_24381 Corylus avellana HOM05D006841 ORTHO05D008607 8.6e-213 743.8 539 73.1
Eucgr.B02230 Eucalyptus grandis HOM05D006841 ORTHO05D008607 3.3e-212 741.9 518 73.0
Gohir.D05G108200 Gossypium hirsutum HOM05D006841 ORTHO05D008607 7.3e-212 740.7 505 73.9
Glyma.11G167300 Glycine max HOM05D006841 ORTHO05D008607 9.5e-212 740.3 470 78.3
CsaV3_6G016010 Cucumis sativus L. HOM05D006841 ORTHO05D008607 2.1e-211 739.2 503 73.8
MELO3C026835.2 Cucumis melo HOM05D006841 ORTHO05D008607 2.3e-210 735.7 507 73.0
CSS0014141 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 6.8e-210 734.2 507 72.6
vmacro14612 Vaccinium macrocarpon HOM05D006841 ORTHO05D008607 8.9e-210 733.8 508 72.2
QL01p039597 Quercus lobata HOM05D006841 ORTHO05D008607 2.2e-208 729.2 492 76.2
Lalb_Chr18g0051231 Lupinus albus HOM05D006841 ORTHO05D008607 2.9e-208 728.8 476 75.6
Lj6g0024894 Lotus japonicus HOM05D006841 ORTHO05D008607 6.4e-208 727.6 479 75.2
TWI79G1747 Tripterygium wilfordii HOM05D006841 ORTHO05D008607 2.4e-207 725.7 512 73.4
ClCG02G019390 Citrullus lanatus HOM05D006841 ORTHO05D008607 7.0e-207 724.2 516 70.7
Rhsim01G0239400 Rhododendron simsii HOM05D006841 ORTHO05D008607 3.5e-206 721.8 508 72.2
Sed0019546 Sechium edule HOM05D006841 ORTHO05D008607 1.3e-205 719.9 517 70.0
Sc06g0008150 Simmondsia chinensis HOM05D006841 ORTHO05D008607 5.6e-204 714.5 504 71.2
Oeu018490.1 Olea europaea HOM05D006841 ORTHO05D008607 7.3e-204 714.1 463 76.7
MSTRG.12683 Avicennia marina HOM05D006841 ORTHO05D008607 6.8e-202 707.6 465 75.7
SalBow2G2391 Salvia bowleyana HOM05D006841 ORTHO05D008607 2.0e-201 706.1 471 75.4
TPR.G32925 Trifolium pratense HOM05D006841 ORTHO05D008607 1.9e-199 699.5 463 75.8
VMungo0540G0160 Vigna mungo HOM05D006841 ORTHO05D008607 3.2e-199 698.7 452 77.2
Psat5g157440 Pisum sativum HOM05D006841 ORTHO05D008607 1.2e-198 696.8 443 76.7
Medtr3g465390 Medicago truncatula HOM05D006841 ORTHO05D008607 1.6e-198 696.4 464 74.8
Lj2A1088G41 Lonicera japonica HOM05D006841 ORTHO05D008607 2.8e-195 685.6 429 80.0
EL10Ac7g15887 Beta vulgaris HOM05D006841 ORTHO05D008607 1.1e-194 683.7 503 67.4
Solyc05g012140.3 Solanum lycopersicum HOM05D006841 ORTHO05D008607 1.5e-193 679.9 463 73.7
Sopen05g006930 Solanum pennellii HOM05D006841 ORTHO05D008607 3.4e-193 678.7 463 73.4
PGSC0003DMG401028313 Solanum tuberosum HOM05D006841 ORTHO05D008607 1.7e-192 676.4 463 73.4
Peaxi162Scf01324g00238 Petunia axillaris HOM05D006841 ORTHO05D008607 3.2e-191 672.2 498 69.7
Hund05042 Selenicereus undatus HOM05D006841 ORTHO05D008607 5.4e-191 671.4 476 69.7
HanXRQChr01g0011601 Helianthus annuus HOM05D006841 ORTHO05D008607 2.7e-190 669.1 444 73.9
AUR62009700 Chenopodium quinoa HOM05D006841 ORTHO05D008607 7.8e-190 667.5 503 66.0
AUR62036246 Chenopodium quinoa HOM05D006841 ORTHO05D008607 8.6e-189 664.1 503 65.8
Ah.15g096690 Amaranthus hybridus HOM05D006841 ORTHO05D008607 3.6e-187 658.7 471 68.2
Migut.N00773 Erythranthe guttata HOM05D006841 ORTHO05D008607 4.7e-187 658.3 453 72.8
Aqoxy1G01268 Aquilegia oxysepala HOM05D006841 ORTHO05D008607 6.2e-187 657.9 509 67.6
CAN.G707.10 Capsicum annuum HOM05D006841 ORTHO05D008607 1.8e-186 656.4 505 66.7
Lsat_1_v5_gn_5_173260 Lactuca sativa HOM05D006841 ORTHO05D008607 6.8e-186 654.4 480 69.6
Ah.08g215320 Amaranthus hybridus HOM05D006841 ORTHO05D008607 1.3e-184 650.2 506 64.8
PSO017G2874 Papaver somniferum HOM05D006841 ORTHO05D008607 7.8e-182 641.0 466 69.3
Ca_14982_v3 Cicer arietinum L. HOM05D006841 ORTHO05D008607 2.3e-181 639.4 489 68.5
PSO349G0316 Papaver somniferum HOM05D006841 ORTHO05D008607 3.9e-181 638.6 519 64.5
THA.LOC104800754 Tarenaya hassleriana HOM05D006841 ORTHO05D008607 3.9e-181 638.6 515 64.1
ECA248G2088 Erigeron canadensis HOM05D006841 ORTHO05D008607 3.1e-178 629.0 415 74.9
Thhalv10016546m.g Eutrema salsugineum HOM05D006841 ORTHO05D008607 4.4e-177 625.2 515 64.5
Aa31LG5G6580 Aethionema arabicum HOM05D006841 ORTHO05D008607 3.8e-176 622.1 516 62.8
Carub.0004s1120 Capsella rubella HOM05D006841 ORTHO05D008607 1.4e-175 620.2 518 62.0
AL4G24870 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 3.2e-175 619.0 512 63.1
unitig_94.g28363 Utricularia gibba HOM05D006841 ORTHO05D008607 4.2e-175 618.6 441 68.9
AT2G30100 Arabidopsis thaliana HOM05D006841 ORTHO05D008607 2.1e-174 616.3 511 62.8
CARHR123400 Cardamine hirsuta HOM05D006841 ORTHO05D008607 2.3e-173 612.8 511 61.6
Sp4g12660 Schrenkiella parvula HOM05D006841 ORTHO05D008607 2.5e-172 609.4 509 62.7
MBI15_g21765_MAGBIO Magnolia biondii HOM05D006841 ORTHO05D008607 2.1e-171 606.3 443 67.9
SGA_v2.0_scaffold104G30129 Striga asiatica HOM05D006841 ORTHO05D008607 1.1e-170 604.0 457 66.3
C04p58980 Brassica napus HOM05D006841 ORTHO05D008607 4.0e-170 602.1 511 60.7
BolC4t27410H Brassica oleracea HOM05D006841 ORTHO05D008607 1.5e-169 600.1 462 64.5
CDE06G2104 Ceratophyllum demersum HOM05D006841 ORTHO05D008607 2.0e-169 599.7 504 60.1
BraA04t17817Z Brassica rapa HOM05D006841 ORTHO05D008607 2.6e-169 599.4 457 64.3
Cc01_g14600 Coffea canephora HOM05D006841 ORTHO05D008607 5.8e-169 598.2 398 76.1
A04p22780 Brassica napus HOM05D006841 ORTHO05D008607 7.6e-169 597.8 452 64.6
GSVIVG01024686001 Vitis vinifera HOM05D006841 ORTHO05D008607 4.9e-168 595.1 381 79.8
BcaC02g08056 Brassica carinata HOM05D006841 ORTHO05D008607 3.0e-165 585.9 502 60.4
DCAR_007349 Daucus carota HOM05D006841 ORTHO05D008607 2.5e-156 556.2 354 77.1
Zm00001eb286480 Zea mays HOM05D006841 ORTHO05D008607 7.7e-145 518.1 420 60.5
Os05g0353300 Oryza sativa ssp. japonica HOM05D006841 ORTHO05D008607 4.6e-142 508.8 429 58.5
ATR0174G035 Amborella trichopoda HOM05D006841 ORTHO05D008607 2.3e-141 506.5 427 60.0
AL59U10050 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 2.0e-132 476.9 451 58.8
Actinidia23875 Actinidia chinensis HOM05D006841 ORTHO05D008607 2.8e-131 473.0 300 78.0
Hma1.2p1_0146F.1_g065520 Hydrangea macrophylla HOM05D006841 ORTHO05D008607 1.0e-117 427.9 257 81.3
HPP92_025104 Vanilla planifolia HOM05D006841 ORTHO05D008607 5.0e-112 409.1 342 59.1
SEGI_38470 Sequoiadendron giganteum HOM05D006841 ORTHO05D008607 1.1e-111 407.9 425 47.5
CSS0012316 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 1.5e-95 354.4 423 50.1
Mapoly0068s0098 Marchantia polymorpha HOM05D006841 ORTHO05D008607 1.2e-92 344.7 449 42.5
Nn2g10947 Nelumbo nucifera HOM05D006841 ORTHO05D008607 1.6e-89 334.3 257 67.7
Nn2g13216 Nelumbo nucifera HOM05D006841 ORTHO05D008607 1.0e-80 305.1 223 69.1
Cpa.g.sc2.394 Carica papaya HOM05D006841 ORTHO05D008607 4.4e-68 263.1 151 83.4
Pp3c12_8330 Physcomitrium patens HOM05D006841 ORTHO05D008607 2.9e-67 260.4 426 36.2
SMO304G0125 Selaginella moellendorffii HOM05D006841 ORTHO05D008607 1.3e-64 251.5 418 35.6
MD11G1194000 Malus domestica HOM05D006841 ORTHO05D008607 2.3e-64 250.8 134 91.8
Oeu034210.1 Olea europaea HOM05D009051 ORTHO05D000140 9.6e-55 218.8 171 65.5
Oeu034517.1 Olea europaea HOM05D006841 ORTHO05D008607 1.9e-42 177.9 228 49.1
Oeu034513.1 Olea europaea HOM05D006841 ORTHO05D008607 4.2e-42 176.8 228 47.4
AagrBONN_evm.TU.Sc2ySwM_117.787 Anthoceros agrestis HOM05D006841 ORTHO05D008607 1.1e-34 152.1 209 40.7
Oeu034514.1 Olea europaea HOM05D006841 ORTHO05D008607 4.2e-34 150.2 127 60.6
Oeu034518.1 Olea europaea HOM05D006841 ORTHO05D008607 1.2e-33 148.7 149 54.4
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 3.1e-29 134.0 108 60.2
Oeu019495.1 Olea europaea HOM05D006841 ORTHO05D008607 1.2e-20 105.5 143 43.4


User provided reference genes

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