Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 5.6e-29 130.2 62 100.0
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 3.3e-21 104.4 62 80.6
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-20 102.4 59 79.7
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.0e-19 99.4 59 76.3
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.5e-13 78.2 61 65.6
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 3.3e-13 77.8 58 65.5
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 3.3e-13 77.8 62 62.9
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 2.1e-12 75.1 60 58.3
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 6.2e-12 73.6 62 58.1
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 8.1e-12 73.2 46 60.9
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 8.1e-12 73.2 46 60.9
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-11 72.8 46 60.9
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 1.1e-11 72.8 46 60.9
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.1e-11 72.8 61 59.0
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.4e-11 72.4 59 55.9
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.4e-11 72.4 43 67.4
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.4e-11 72.4 39 79.5
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.4e-11 72.4 39 79.5
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.4e-11 72.4 39 79.5
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.3e-11 71.6 43 69.8
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 3.1e-11 71.2 46 56.5
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.1e-11 71.2 39 69.2
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 4.0e-11 70.9 43 69.8
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 4.0e-11 70.9 55 60.0
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 4.0e-11 70.9 39 71.8
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 5.2e-11 70.5 55 58.2
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 8.9e-11 69.7 44 56.8
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 8.9e-11 69.7 44 56.8
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 8.9e-11 69.7 44 59.1
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 8.9e-11 69.7 38 73.7
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 8.9e-11 69.7 43 67.4
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 1.2e-10 69.3 49 53.1
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.2e-10 69.3 55 56.4
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-10 69.3 55 56.4
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.2e-10 69.3 43 62.8
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.2e-10 69.3 43 62.8
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.2e-10 69.3 56 58.9
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.2e-10 69.3 59 52.5
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.5e-10 68.9 58 56.9
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 1.5e-10 68.9 47 59.6
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 2.0e-10 68.6 59 52.5
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 2.0e-10 68.6 59 52.5
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 2.0e-10 68.6 59 52.5
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 2.0e-10 68.6 39 69.2
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 2.6e-10 68.2 39 66.7
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 2.6e-10 68.2 44 56.8
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 2.6e-10 68.2 44 56.8
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 3.4e-10 67.8 56 64.3
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 3.4e-10 67.8 39 69.2
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.4e-10 67.4 55 54.5
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 4.4e-10 67.4 39 66.7
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 5.8e-10 67.0 44 56.8
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.8e-10 67.0 39 69.2
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 1.3e-09 65.9 55 54.5
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.3e-09 65.9 53 52.8
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 1.3e-09 65.9 39 66.7
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 1.3e-09 65.9 39 66.7
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 1.3e-09 65.9 39 66.7
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.7e-09 65.5 62 48.4
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.7e-09 65.5 58 53.4
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 2.2e-09 65.1 39 66.7
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 2.2e-09 65.1 38 68.4
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 2.9e-09 64.7 44 54.5
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 2.9e-09 64.7 44 54.5
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 2.9e-09 64.7 43 62.8
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 3.7e-09 64.3 55 50.9
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.7e-09 64.3 54 55.6
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 4.9e-09 63.9 43 62.8
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 4.9e-09 63.9 39 69.2
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 6.4e-09 63.5 39 66.7
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 8.3e-09 63.2 39 69.2
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 8.3e-09 63.2 38 68.4
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 8.3e-09 63.2 38 68.4
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.1e-08 62.8 53 54.7
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 1.4e-08 62.4 39 66.7
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.9e-08 62.0 37 70.3
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.9e-08 62.0 39 66.7
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 2.4e-08 61.6 40 55.0
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 2.4e-08 61.6 59 52.5
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 3.2e-08 61.2 38 65.8
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 3.2e-08 61.2 39 66.7
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 4.1e-08 60.8 54 48.1
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 4.1e-08 60.8 39 69.2
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 9.2e-08 59.7 55 52.7
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.6e-07 58.9 52 48.1
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.6e-07 58.9 72 43.1
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 2.1e-07 58.5 39 61.5
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.5e-07 57.8 64 43.8
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 7.8e-07 56.6 57 45.6
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.0e-06 56.2 28 78.6
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 5.1e-06 53.9 51 47.1


User provided reference genes

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