Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G038400 Prunus persica HOM05D007102 ORTHO05D008950 9.6e-135 483.4 231 100.0
MD03G1047200 Malus domestica HOM05D007102 ORTHO05D008950 8.8e-120 433.7 233 91.0
MD11G1049700 Malus domestica HOM05D007102 ORTHO05D008950 1.3e-118 429.9 233 90.1
RcHm_v2.0_Chr5g0073911 Rosa chinensis HOM05D007102 ORTHO05D008950 1.2e-108 396.7 227 85.0
FAN21G1718 Fragaria x ananassa HOM05D007102 ORTHO05D008950 9.4e-106 387.1 224 83.9
FAN16G1418 Fragaria x ananassa HOM05D007102 ORTHO05D008950 1.6e-105 386.3 224 83.5
FvH4_3g41140 Fragaria vesca HOM05D007102 ORTHO05D008950 4.7e-105 384.8 224 83.0
FAN25G2933 Fragaria x ananassa HOM05D007102 ORTHO05D008950 3.0e-104 382.1 224 82.6
QL01p023619 Quercus lobata HOM05D007102 ORTHO05D008950 8.8e-104 380.6 232 79.7
CiPaw.13G061600 Carya illinoinensis HOM05D007102 ORTHO05D008950 7.7e-100 367.5 226 77.4
Cfa011824 Carpinus fangiana HOM05D007102 ORTHO05D008950 1.0e-99 367.1 233 77.3
Haze_24461 Corylus avellana HOM05D007102 ORTHO05D008950 6.1e-97 357.8 234 76.1
Ciclev10002429m.g Citrus clementina HOM05D007102 ORTHO05D008950 5.7e-95 351.3 229 75.5
Manes.18G123900 Manihot esculenta HOM05D007102 ORTHO05D008950 2.0e-92 342.8 232 74.1
Glyma.18G049600 Glycine max HOM05D007102 ORTHO05D008950 5.5e-90 334.7 217 74.7
Potri.013G160600 Populus trichocarpa HOM05D007102 ORTHO05D008950 2.1e-89 332.8 224 72.8
Medtr3g062890 Medicago truncatula HOM05D007102 ORTHO05D008950 2.7e-89 332.4 217 73.3
Sabra13G0128500 Salix brachista HOM05D007102 ORTHO05D008950 2.7e-89 332.4 232 69.8
TWI31G0907 Tripterygium wilfordii HOM05D007102 ORTHO05D008950 6.1e-89 331.3 192 82.3
Eucgr.J01847 Eucalyptus grandis HOM05D007102 ORTHO05D008950 8.0e-89 330.9 231 71.9
Duzib168G2173 Durio zibethinus HOM05D007102 ORTHO05D008950 1.4e-88 330.1 206 75.7
Cc01_g08950 Coffea canephora HOM05D007102 ORTHO05D008950 2.3e-88 329.3 232 69.8
Thecc.09G366000 Theobroma cacao HOM05D007102 ORTHO05D008950 2.3e-88 329.3 178 85.4
Dinv12295 Davidia involucrata HOM05D007102 ORTHO05D008950 6.8e-88 327.8 187 84.0
Glyma.11G201200 Glycine max HOM05D007102 ORTHO05D008950 8.8e-88 327.4 195 79.5
MELO3C019595.2 Cucumis melo HOM05D007102 ORTHO05D008950 1.5e-87 326.6 167 89.2
CsaV3_6G013250 Cucumis sativus L. HOM05D007102 ORTHO05D008950 1.5e-87 326.6 167 89.2
Lalb_Chr20g0117241 Lupinus albus HOM05D007102 ORTHO05D008950 1.5e-87 326.6 193 78.2
PGR042G3056 Punica granatum HOM05D007102 ORTHO05D008950 2.0e-87 326.2 232 70.3
Lj6g0026798 Lotus japonicus HOM05D007102 ORTHO05D008950 2.6e-87 325.9 192 81.2
Hma1.2p1_0170F.1_g075400 Hydrangea macrophylla HOM05D007102 ORTHO05D008950 9.8e-87 323.9 169 87.6
Lsat_1_v5_gn_8_99200 Lactuca sativa HOM05D007102 ORTHO05D008950 1.3e-86 323.6 229 68.6
Psat5g145240 Pisum sativum HOM05D007102 ORTHO05D008950 2.8e-86 322.4 194 76.8
CSS0027114 Camellia sinensis var. sinensis HOM05D007102 ORTHO05D008950 3.7e-86 322.0 170 87.1
CANSAT54G0300 Cannabis sativa HOM05D007102 ORTHO05D008950 4.8e-86 321.6 173 86.7
HanXRQChr16g0508431 Helianthus annuus HOM05D007102 ORTHO05D008950 6.3e-86 321.2 229 68.6
ECA236G5009 Erigeron canadensis HOM05D007102 ORTHO05D008950 1.1e-85 320.5 229 68.1
Ca_15087_v3 Cicer arietinum L. HOM05D007102 ORTHO05D008950 3.1e-85 318.9 174 86.2
Actinidia23827 Actinidia chinensis HOM05D007102 ORTHO05D008950 4.1e-85 318.5 235 68.5
GSVIVG01024526001 Vitis vinifera HOM05D007102 ORTHO05D008950 4.1e-85 318.5 181 81.2
Nn2g10214 Nelumbo nucifera HOM05D007102 ORTHO05D008950 7.0e-85 317.8 176 81.2
Phvul.006G081700 Phaseolus vulgaris HOM05D007102 ORTHO05D008950 7.0e-85 317.8 213 70.4
vmacro14656 Vaccinium macrocarpon HOM05D007102 ORTHO05D008950 9.1e-85 317.4 223 69.1
Gohir.D13G017200 Gossypium hirsutum HOM05D007102 ORTHO05D008950 1.2e-84 317.0 176 80.7
TPR.G13817 Trifolium pratense HOM05D007102 ORTHO05D008950 3.5e-84 315.5 205 74.1
Rhsim01G0245100 Rhododendron simsii HOM05D007102 ORTHO05D008950 7.7e-84 314.3 222 69.4
MSTRG.21273 Avicennia marina HOM05D007102 ORTHO05D008950 1.0e-83 313.9 227 67.8
EL10Ac1g01074 Beta vulgaris HOM05D007102 ORTHO05D008950 1.3e-83 313.5 229 68.6
Migut.D00799 Erythranthe guttata HOM05D007102 ORTHO05D008950 2.3e-83 312.8 227 68.7
CAN.G749.40 Capsicum annuum HOM05D007102 ORTHO05D008950 2.9e-83 312.4 177 80.8
Gorai.013G019100 Gossypium raimondii HOM05D007102 ORTHO05D008950 2.9e-83 312.4 221 67.4
PSO266G0014 Papaver somniferum HOM05D007102 ORTHO05D008950 3.8e-83 312.0 165 85.5
PSO384G1696 Papaver somniferum HOM05D007102 ORTHO05D008950 3.8e-83 312.0 165 85.5
DCAR_021104 Daucus carota HOM05D007102 ORTHO05D008950 6.5e-83 311.2 229 65.9
Nitab4.5_0001856g0010 Nicotiana tabacum HOM05D007102 ORTHO05D008950 6.5e-83 311.2 174 82.8
Peaxi162Scf00788g00047 Petunia axillaris HOM05D007102 ORTHO05D008950 8.6e-83 310.8 188 77.7
Aqoxy5G01440 Aquilegia oxysepala HOM05D007102 ORTHO05D008950 1.5e-82 310.1 169 83.4
unitig_0.g217 Utricularia gibba HOM05D007102 ORTHO05D008950 3.3e-82 308.9 227 65.2
VMungo0540G2371 Vigna mungo HOM05D007102 ORTHO05D008950 4.2e-82 308.5 188 75.5
CDE07G1209 Ceratophyllum demersum HOM05D007102 ORTHO05D008950 5.5e-82 308.1 170 81.8
Sopen09g032040 Solanum pennellii HOM05D007102 ORTHO05D008950 9.5e-82 307.4 170 82.4
PGSC0003DMG400006084 Solanum tuberosum HOM05D007102 ORTHO05D008950 9.5e-82 307.4 184 78.8
TAR624G0943 Trochodendron aralioides HOM05D007102 ORTHO05D008950 2.1e-81 306.2 171 81.3
Lj2C1106T0 Lonicera japonica HOM05D007102 ORTHO05D008950 2.8e-81 305.8 226 67.3
AUR62027864 Chenopodium quinoa HOM05D007102 ORTHO05D008950 3.6e-81 305.4 190 73.7
THA.LOC104819153 Tarenaya hassleriana HOM05D007102 ORTHO05D008950 3.6e-81 305.4 173 80.3
Solyc09g083150.4 Solanum lycopersicum HOM05D007102 ORTHO05D008950 6.1e-81 304.7 170 81.8
arahy.Tifrunner.gnm1.ann1.6T6LBL Arachis hypogaea HOM05D007102 ORTHO05D008950 1.4e-80 303.5 197 76.6
AUR62019027 Chenopodium quinoa HOM05D007102 ORTHO05D008950 1.8e-80 303.1 215 69.3
AL8G34360 Arabidopsis lyrata HOM05D007102 ORTHO05D008950 1.5e-79 300.1 173 79.2
Carub.0008s1880 Capsella rubella HOM05D007102 ORTHO05D008950 1.5e-79 300.1 173 79.2
ClCG02G018940 Citrullus lanatus HOM05D007102 ORTHO05D008950 1.5e-79 300.1 159 86.8
Zm00001eb145680 Zea mays HOM05D007102 ORTHO05D008950 3.4e-79 298.9 179 79.3
AT5G58260 Arabidopsis thaliana HOM05D007102 ORTHO05D008950 4.4e-79 298.5 168 80.4
CARHR272050 Cardamine hirsuta HOM05D007102 ORTHO05D008950 7.5e-79 297.7 166 81.3
BcaB01g04483 Brassica carinata HOM05D007102 ORTHO05D008950 3.7e-78 295.4 176 76.1
Atru.chr10.2354 Acer truncatum HOM05D007102 ORTHO05D008950 4.9e-78 295.0 212 69.8
BcaB01g04537 Brassica carinata HOM05D007102 ORTHO05D008950 4.9e-78 295.0 176 76.7
BcaB01g04546 Brassica carinata HOM05D007102 ORTHO05D008950 4.9e-78 295.0 176 76.7
BolC3t13892H Brassica oleracea HOM05D007102 ORTHO05D008950 4.9e-78 295.0 176 76.7
Cpa.g.sc2.262 Carica papaya HOM05D007102 ORTHO05D008950 4.9e-78 295.0 216 68.5
A03p12340 Brassica napus HOM05D007102 ORTHO05D008950 6.3e-78 294.7 176 76.1
C03p14490 Brassica napus HOM05D007102 ORTHO05D008950 6.3e-78 294.7 176 76.1
BraA03t10546Z Brassica rapa HOM05D007102 ORTHO05D008950 6.3e-78 294.7 176 76.1
Sp6g19920 Schrenkiella parvula HOM05D007102 ORTHO05D008950 1.4e-77 293.5 168 79.2
Ah.05g170720 Amaranthus hybridus HOM05D007102 ORTHO05D008950 1.8e-77 293.1 178 76.4
Os01g0882500 Oryza sativa ssp. japonica HOM05D007102 ORTHO05D008950 7.0e-77 291.2 155 82.6
Sed0015928 Sechium edule HOM05D007102 ORTHO05D008950 9.2e-77 290.8 149 89.9
FAN11G2493 Fragaria x ananassa HOM05D007102 ORTHO05D008950 1.6e-76 290.0 224 67.4
MBI15_g05591_MAGBIO Magnolia biondii HOM05D007102 ORTHO05D008950 1.1e-74 283.9 195 70.3
Oeu005352.1 Olea europaea HOM05D007102 ORTHO05D008950 1.9e-74 283.1 203 70.0
Nitab4.5_0007585g0040 Nicotiana tabacum HOM05D007102 ORTHO05D008950 9.5e-74 280.8 177 76.8
ATR1127G111 Amborella trichopoda HOM05D007102 ORTHO05D008950 1.5e-71 273.5 149 84.6
Hund16865 Selenicereus undatus HOM05D007102 ORTHO05D008950 4.6e-68 261.9 169 75.1
Gohir.A13G016100 Gossypium hirsutum HOM05D007102 ORTHO05D008950 4.4e-63 245.4 167 69.5
Mapoly0073s0080 Marchantia polymorpha HOM05D007102 ORTHO05D008950 2.2e-62 243.0 155 71.6
Pp3c3_15360 Physcomitrium patens HOM05D007102 ORTHO05D008950 2.4e-61 239.6 171 63.2
Hma1.2p1_0170F.1_g075390 Hydrangea macrophylla HOM05D007102 ORTHO05D008950 3.0e-59 232.6 122 86.1
SMO119G0373 Selaginella moellendorffii HOM05D007102 ORTHO05D008950 3.3e-58 229.2 155 65.8
Aa31LG11G50 Aethionema arabicum HOM05D007102 ORTHO05D008950 6.2e-57 224.9 122 83.6
COL.COLO4_11231 Corchorus olitorius HOM05D007102 ORTHO05D008950 1.8e-56 223.4 148 73.0
Actinidia34510 Actinidia chinensis HOM05D007102 ORTHO05D008950 3.2e-53 212.6 111 85.6
SEGI_29953 Sequoiadendron giganteum HOM05D007102 ORTHO05D008950 1.1e-45 187.6 123 66.7
arahy.Tifrunner.gnm1.ann1.S4JT24 Arachis hypogaea HOM05D007102 ORTHO05D008950 9.2e-45 184.5 185 55.7
Pp3c10_12660 Physcomitrium patens HOM05D007102 ORTHO05D008950 1.6e-41 173.7 130 62.3
Haze_24494 Corylus avellana HOM05D007102 ORTHO05D008950 3.4e-39 166.0 233 45.1
Thhalv10014691m.g Eutrema salsugineum HOM05D007102 ORTHO05D008950 8.1e-33 144.8 90 72.2
CBR_g36846 Chara braunii HOM05D007102 ORTHO05D008950 2.0e-31 140.2 190 41.1
CiPaw.13G061300 Carya illinoinensis HOM05D007102 ORTHO05D008950 2.2e-14 83.6 41 92.7
SEGI_39426 Sequoiadendron giganteum HOM05D007102 ORTHO05D008950 4.9e-14 82.4 47 78.7
A10p15960 Brassica napus HOM05D007102 ORTHO05D008950 2.9e-06 56.6 38 65.8


User provided reference genes

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