Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.7e-85 319.3 165 100.0
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.6e-57 225.7 197 65.5
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.7e-56 223.0 207 62.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 6.6e-53 211.1 192 60.4
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 8.6e-53 210.7 193 60.6
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 9.5e-52 207.2 201 59.2
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 9.5e-52 207.2 149 70.5
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 2.1e-51 206.1 138 73.2
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 3.6e-51 205.3 148 70.3
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 3.6e-51 205.3 192 59.4
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.7e-51 204.9 171 62.0
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 3.1e-50 202.2 162 63.6
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 4.0e-50 201.8 164 63.4
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 6.8e-50 201.1 169 62.1
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 8.9e-50 200.7 152 67.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.2e-49 200.3 216 52.8
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.0e-49 199.5 153 66.7
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 3.4e-49 198.7 201 56.7
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.4e-49 198.7 185 57.3
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.8e-49 198.0 148 69.6
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.5e-49 197.6 127 74.0
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.3e-48 196.8 139 73.4
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.3e-48 196.8 208 54.8
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.7e-48 196.4 179 59.2
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.2e-48 196.1 175 60.6
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 3.7e-48 195.3 175 60.0
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 3.7e-48 195.3 156 64.7
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.7e-48 195.3 151 66.2
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 4.9e-48 194.9 151 66.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.3e-48 194.1 151 66.9
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 8.3e-48 194.1 143 69.2
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 8.3e-48 194.1 148 66.9
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.3e-48 194.1 158 63.9
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.1e-47 193.7 151 65.6
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.1e-47 193.7 171 60.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.4e-47 192.6 151 64.9
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.4e-47 192.6 151 64.9
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 3.2e-47 192.2 174 59.2
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.1e-47 191.8 159 62.9
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 5.4e-47 191.4 151 64.2
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 5.4e-47 191.4 181 56.4
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 5.4e-47 191.4 157 63.1
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 7.1e-47 191.0 174 59.2
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 2.7e-46 189.1 151 65.6
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.5e-46 188.7 188 54.8
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 3.5e-46 188.7 164 59.8
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 4.6e-46 188.3 168 59.5
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.6e-46 188.3 158 61.4
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 6.0e-46 188.0 188 54.8
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.0e-46 188.0 191 56.5
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 7.8e-46 187.6 179 56.4
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.3e-45 186.8 146 61.6
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.3e-45 186.8 168 60.1
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.3e-45 186.8 147 66.0
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.7e-45 186.4 171 59.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 2.3e-45 186.0 160 61.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.3e-45 186.0 153 64.1
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 2.3e-45 186.0 161 60.2
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 5.1e-45 184.9 160 62.5
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 5.1e-45 184.9 153 63.4
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 6.6e-45 184.5 175 57.1
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.1e-44 183.7 192 52.1
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.5e-44 183.3 178 55.6
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.3e-44 181.8 148 62.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.6e-43 179.9 159 62.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 2.1e-43 179.5 140 63.6
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.1e-43 179.5 148 68.9
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.1e-43 179.5 168 57.7
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.6e-43 178.7 155 63.9
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 8.1e-43 177.6 151 61.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 8.1e-43 177.6 188 53.2
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 5.2e-42 174.9 96 90.6
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.2e-41 173.7 211 49.8
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.5e-41 173.3 144 60.4
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.4e-41 172.2 200 48.5
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 9.9e-41 170.6 153 58.2
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 9.9e-41 170.6 135 65.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.9e-40 169.1 161 55.3
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 3.2e-39 165.6 94 85.1
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.2e-39 164.1 151 55.0
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.2e-38 163.7 162 54.3
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 7.8e-38 161.0 94 85.1
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.0e-37 160.6 144 56.9
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.7e-37 159.8 92 84.8
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.7e-37 159.8 160 53.1
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 6.6e-37 157.9 94 83.0
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.1e-36 157.1 94 79.8
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.1e-36 157.1 91 83.5
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.9e-36 156.4 94 79.8
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.5e-36 156.0 94 80.9
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.3e-36 155.6 175 48.6
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.3e-36 155.6 94 80.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 7.3e-36 154.5 94 79.8
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 9.6e-36 154.1 155 52.3
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.2e-35 153.7 139 54.7
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.2e-35 153.7 94 79.8
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 2.1e-35 152.9 171 49.7
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 2.8e-35 152.5 94 80.9
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.6e-35 152.1 92 79.3
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.6e-35 152.1 156 51.9
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 4.7e-35 151.8 158 50.6
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 6.2e-35 151.4 139 61.2
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.1e-34 150.6 166 50.0
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 5.2e-34 148.3 94 78.7
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 8.9e-34 147.5 92 79.3
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 8.9e-34 147.5 91 79.1
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.5e-33 146.7 94 76.6
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.5e-33 146.7 197 47.7
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.0e-33 146.4 91 81.3
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 2.6e-33 146.0 151 51.7
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 9.9e-33 144.1 169 50.3
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.3e-32 143.7 172 46.5
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 3.8e-32 142.1 157 51.0
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 4.9e-32 141.7 94 74.5
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 8.4e-32 141.0 121 60.3
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.4e-31 140.2 92 71.7
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 7.1e-31 137.9 151 48.3
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 9.3e-31 137.5 94 69.1
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 6.0e-30 134.8 94 68.1
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.7e-29 133.3 127 55.9
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.3e-28 129.0 156 44.2
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.1e-26 124.0 163 43.6
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 2.4e-26 122.9 81 75.3
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.1e-26 122.5 160 48.1
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 4.0e-26 122.1 147 51.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 5.3e-26 121.7 148 46.6
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 2.6e-25 119.4 160 43.1
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 4.5e-25 118.6 94 60.6
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.3e-24 117.1 69 78.3
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.7e-24 116.7 158 46.8
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.4e-23 113.6 91 65.9
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.3e-23 110.9 91 67.0
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 6.0e-22 108.2 120 50.8
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 6.0e-22 108.2 70 74.3
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.3e-21 106.3 71 71.8
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.5e-20 103.6 162 39.5
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.3e-20 102.4 56 83.9
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 4.0e-18 95.5 94 58.5
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.2e-17 94.0 143 45.5
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.7e-16 90.1 63 76.2
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.9e-16 88.6 151 38.4
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.1e-15 87.4 55 72.7
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 5.5e-15 85.1 71 67.6
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.9e-12 76.6 52 61.5
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.3e-11 73.9 104 48.1
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.8e-11 72.8 106 47.2
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 4.0e-10 68.9 153 35.9
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.4e-09 65.9 79 44.3
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 1.0e-08 64.3 36 83.3
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.7e-08 63.5 41 65.9
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.7e-08 63.5 47 68.1
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 3.8e-08 62.4 42 69.0
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.5e-08 61.6 44 63.6
RcHm_v2.0_Chr4g0393461 Rosa chinensis HOM05D004274 ORTHO05D004980 6.5e-08 61.6 70 50.0
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 8.4e-08 61.2 37 73.0
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.1e-07 60.8 39 69.2
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.5e-07 59.7 43 60.5
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 2.5e-07 59.7 40 67.5
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 3.2e-07 59.3 84 47.6
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 3.2e-07 59.3 40 62.5
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.2e-07 58.9 51 56.9
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 4.2e-07 58.9 41 63.4
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 7.1e-07 58.2 116 37.1
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 3.5e-06 55.8 37 62.2
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.6e-06 55.5 37 64.9
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 6.0e-06 55.1 37 67.6
RcHm_v2.0_Chr2g0136141 Rosa chinensis HOM05D004274 ORTHO05D004980 6.0e-06 55.1 39 71.8


User provided reference genes

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