Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 0.0e+00 1430.2 752 100.0
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 6.4e-305 1050.4 755 76.3
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 2.1e-295 1018.8 757 76.4
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.2e-221 773.9 771 61.3
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.4e-219 766.1 774 60.6
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 4.1e-219 765.4 771 61.6
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.9e-217 758.8 773 60.7
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.9e-216 756.5 772 60.6
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.2e-205 720.7 755 60.0
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.3e-185 654.1 771 54.1
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 1.5e-173 614.0 780 52.9
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 5.3e-166 589.0 747 50.3
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 3.4e-165 586.3 760 52.0
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 3.9e-161 572.8 762 47.1
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 4.3e-160 569.3 744 49.9
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 5.0e-156 555.8 761 48.8
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 6.5e-156 555.4 769 48.4
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 3.9e-153 546.2 766 48.8
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 3.7e-151 539.7 765 48.8
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 4.5e-149 532.7 781 46.5
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 8.5e-148 528.5 788 46.4
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 9.4e-147 525.0 756 49.2
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.2e-146 524.6 771 46.3
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 3.6e-146 523.1 767 46.3
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 4.7e-146 522.7 745 46.4
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 2.3e-145 520.4 769 47.3
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.0e-145 520.0 822 43.7
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 1.7e-143 514.2 759 46.2
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 3.7e-143 513.1 795 46.5
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 1.4e-142 511.1 765 45.5
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 3.2e-139 500.0 767 46.2
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.0e-137 495.0 897 39.7
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 2.3e-137 493.8 834 43.8
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.5e-136 491.1 749 46.2
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 1.8e-134 484.2 791 45.8
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 2.0e-133 480.7 787 46.1
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 7.7e-133 478.8 793 43.1
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.0e-128 464.2 926 37.3
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 9.8e-128 461.8 795 45.0
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 9.8e-128 461.8 795 45.0
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 1.1e-123 448.4 760 42.1
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 1.2e-122 444.9 760 42.2
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 4.0e-121 439.9 778 44.2
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 3.4e-120 436.8 760 42.4
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.7e-119 434.5 779 42.1
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 2.8e-119 433.7 771 41.5
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 5.9e-117 426.0 763 42.3
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 3.6e-114 416.8 751 41.0
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 2.6e-112 410.6 758 42.5
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 5.8e-112 409.5 769 39.4
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 7.3e-107 392.5 779 38.5
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.2e-106 391.7 735 40.0
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.6e-106 391.3 757 38.6
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.6e-104 384.0 771 38.1
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 1.7e-103 381.3 756 39.2
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.9e-102 377.9 726 39.1
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 5.4e-102 376.3 767 38.9
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 7.8e-101 372.5 772 38.2
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 3.0e-100 370.5 698 40.1
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 1.1e-99 368.6 772 38.0
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 3.1e-97 360.5 762 37.5
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 8.9e-97 359.0 733 37.0
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 5.8e-96 356.3 750 37.1
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.9e-95 353.2 743 38.4
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 3.2e-94 350.5 785 36.3
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 5.4e-94 349.7 786 37.8
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 7.1e-94 349.4 776 36.6
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.2e-93 348.6 771 36.6
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.6e-93 348.2 767 37.5
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 2.7e-93 347.4 786 37.3
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 2.7e-93 347.4 756 37.3
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 3.0e-92 344.0 705 39.1
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 8.6e-92 342.4 779 36.1
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.9e-91 341.3 736 37.1
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 4.3e-91 340.1 768 36.3
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 5.6e-91 339.7 761 37.2
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.4e-89 335.1 676 38.8
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.5e-88 331.6 755 37.1
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 5.8e-88 329.7 761 37.7
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.3e-87 328.6 765 36.6
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 8.4e-87 325.9 788 36.2
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 3.2e-86 323.9 688 38.1
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 9.2e-86 322.4 782 36.3
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 6.6e-84 316.2 728 37.8
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 2.6e-80 304.3 743 36.5
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 5.8e-80 303.1 766 34.7
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.3e-79 302.0 765 34.6
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 9.3e-78 295.8 760 35.5
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 1.6e-77 295.0 800 37.4
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 4.6e-77 293.5 765 34.4
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 6.0e-77 293.1 790 37.3
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 6.0e-77 293.1 704 36.1
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 1.0e-76 292.4 761 35.6
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 6.9e-73 279.6 753 34.3
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 5.8e-72 276.6 793 36.4
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 1.6e-69 268.5 800 35.5
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 1.6e-69 268.5 766 34.3
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 1.8e-68 265.0 809 35.5
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 2.5e-67 261.2 719 33.2
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 8.1e-66 256.1 800 35.5
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 1.0e-63 249.2 721 33.0
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 2.5e-62 244.6 781 33.2
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 2.1e-61 241.5 768 34.5
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.6e-61 240.4 714 32.6
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 6.0e-61 240.0 783 29.9
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.3e-60 238.8 709 32.7
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 3.3e-59 234.2 707 32.7
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 4.3e-59 233.8 757 32.1
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.3e-58 232.3 701 33.2
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 6.2e-58 229.9 808 33.5
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 6.2e-58 229.9 808 33.5
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 5.8e-56 223.4 787 28.8
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.3e-55 222.2 724 31.4
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 1.4e-54 218.8 788 33.2
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 1.4e-54 218.8 804 32.7
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 1.4e-54 218.8 804 32.7
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 3.5e-53 214.2 787 33.5
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 6.1e-53 213.4 793 32.7
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 1.8e-52 211.8 796 32.9
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 3.0e-52 211.1 795 33.3
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 6.7e-52 209.9 809 31.8
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 8.7e-52 209.5 173 63.0
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 6.3e-50 203.4 288 49.3
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 3.1e-41 174.5 123 65.0
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.1e-37 161.8 782 29.8
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 3.0e-36 157.9 675 28.4
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.0e-35 155.2 712 28.7
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 4.8e-34 150.6 581 30.6
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 1.4e-25 122.5 833 25.7
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 3.1e-17 94.7 851 24.2
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.3e-15 89.4 765 23.9
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 6.5e-15 87.0 227 29.5
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 2.5e-14 85.1 834 24.0
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.1e-13 82.0 94 47.9
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 8.3e-10 70.1 107 39.3
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 5.4e-09 67.4 82 51.2
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 9.1e-09 66.6 110 36.4
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.0e-07 63.2 39 76.9


User provided reference genes

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