Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 1.7e-85 319.3 165 100.0
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 2.6e-73 278.9 165 87.9
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 2.0e-70 269.2 165 86.7
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.3e-69 265.8 165 85.5
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 8.6e-69 263.8 165 85.5
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 8.6e-69 263.8 165 85.5
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 2.2e-64 249.2 164 79.3
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 2.7e-62 242.3 164 77.4
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 3.9e-61 238.4 164 76.8
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 2.5e-60 235.7 163 77.9
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 2.8e-59 232.3 168 77.4
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 6.8e-58 227.6 167 71.9
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 2.0e-57 226.1 163 74.2
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 5.8e-57 224.6 161 73.3
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 5.8e-57 224.6 164 73.2
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 7.5e-57 224.2 163 77.9
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 7.5e-57 224.2 163 77.3
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 7.5e-57 224.2 166 73.5
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 1.3e-56 223.4 174 73.0
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 1.7e-56 223.0 163 76.1
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 1.7e-56 223.0 160 74.4
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 2.9e-56 222.2 164 71.3
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 3.7e-56 221.9 164 73.2
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 3.7e-56 221.9 163 73.0
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 4.9e-56 221.5 166 74.1
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 6.4e-56 221.1 163 71.2
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 8.3e-56 220.7 169 74.6
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 1.9e-55 219.5 165 72.1
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 2.4e-55 219.2 163 74.8
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 3.2e-55 218.8 139 80.6
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 5.4e-55 218.0 166 72.3
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 5.4e-55 218.0 166 72.3
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 5.4e-55 218.0 166 72.3
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 5.4e-55 218.0 164 75.6
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 9.2e-55 217.2 165 72.1
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 1.2e-54 216.9 138 81.2
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 2.7e-54 215.7 137 81.8
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.7e-54 215.7 165 71.5
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 3.5e-54 215.3 163 71.8
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 3.5e-54 215.3 136 80.9
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.6e-54 214.9 137 81.8
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 4.6e-54 214.9 164 71.3
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 6.0e-54 214.5 142 80.3
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 7.8e-54 214.2 157 73.2
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 1.7e-53 213.0 166 71.1
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 1.7e-53 213.0 166 71.1
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 1.7e-53 213.0 166 71.1
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.7e-53 213.0 165 71.5
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 1.7e-53 213.0 134 80.6
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 2.3e-53 212.6 165 70.9
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 2.3e-53 212.6 165 70.9
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 3.0e-53 212.2 171 68.4
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 3.0e-53 212.2 157 73.9
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 3.0e-53 212.2 166 71.1
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 3.9e-53 211.8 166 71.1
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.9e-53 211.8 164 70.7
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 5.0e-53 211.5 160 72.5
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 6.6e-53 211.1 166 71.7
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 6.6e-53 211.1 166 71.7
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 8.6e-53 210.7 167 71.3
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 8.6e-53 210.7 167 71.3
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 1.1e-52 210.3 163 68.7
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.1e-52 210.3 166 70.5
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 1.1e-52 210.3 167 71.9
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.1e-52 210.3 138 79.0
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 1.1e-52 210.3 163 70.6
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 1.5e-52 209.9 166 69.9
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 1.5e-52 209.9 166 69.9
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 1.5e-52 209.9 166 67.5
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 1.5e-52 209.9 166 69.3
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 1.5e-52 209.9 159 73.6
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 1.5e-52 209.9 135 78.5
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 1.9e-52 209.5 167 70.7
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 1.9e-52 209.5 163 70.6
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 2.5e-52 209.1 164 70.7
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.5e-52 209.1 166 71.1
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 2.5e-52 209.1 164 68.3
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 3.3e-52 208.8 165 69.7
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 3.3e-52 208.8 132 78.0
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 4.3e-52 208.4 113 89.4
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 4.3e-52 208.4 151 74.2
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 4.3e-52 208.4 139 79.1
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 5.6e-52 208.0 166 68.7
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 7.3e-52 207.6 169 71.0
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 7.3e-52 207.6 163 68.7
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 9.5e-52 207.2 164 68.3
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 9.5e-52 207.2 161 70.2
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 1.6e-51 206.5 169 69.2
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.8e-51 205.7 165 69.1
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 8.1e-51 204.1 162 69.1
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 8.1e-51 204.1 167 68.9
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 1.1e-50 203.8 165 67.3
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 1.1e-50 203.8 165 67.3
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.4e-50 203.4 164 67.1
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.8e-50 203.0 162 68.5
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 4.0e-50 201.8 164 68.3
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 6.8e-50 201.1 137 75.2
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 8.9e-50 200.7 164 67.7
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 8.9e-50 200.7 137 75.2
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 1.2e-49 200.3 140 74.3
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 1.2e-49 200.3 137 75.2
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 2.6e-49 199.1 168 67.9
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 2.2e-48 196.1 108 87.0
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 3.7e-48 195.3 108 89.8
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 1.1e-47 193.7 152 69.7
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.1e-47 193.7 101 94.1
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 1.2e-46 190.3 157 66.2
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 1.6e-46 189.9 99 93.9
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 3.5e-46 188.7 138 71.0
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 2.3e-45 186.0 143 68.5
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 8.6e-45 184.1 164 66.5
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 1.5e-44 183.3 138 68.1
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.6e-43 179.9 158 64.6
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 3.1e-42 175.6 139 68.3
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 4.9e-40 168.3 165 60.6
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 3.0e-37 159.1 166 51.2
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 5.6e-36 154.8 135 58.5
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 9.6e-36 154.1 97 73.2
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 2.0e-33 146.4 162 48.1
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 2.6e-33 146.0 164 55.5
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 3.4e-33 145.6 119 63.9
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 2.4e-31 139.4 162 47.5
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 1.1e-28 130.6 74 83.8
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 8.7e-21 104.4 90 55.6
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 6.9e-18 94.7 53 88.7
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 2.6e-17 92.8 86 54.7
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 4.5e-17 92.0 51 90.2
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 4.5e-17 92.0 51 90.2
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 7.6e-17 91.3 130 45.4
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 4.3e-12 75.5 97 40.2


User provided reference genes

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