Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.9e-226 788.9 410 100.0
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.5e-212 741.5 410 93.7
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.9e-211 738.4 410 93.2
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.9e-197 692.6 411 86.9
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.6e-196 689.5 410 87.1
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.5e-196 688.3 411 85.4
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.7e-195 686.0 410 86.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.9e-194 682.6 411 85.2
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 3.3e-194 681.8 409 85.3
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 9.5e-194 680.2 413 85.2
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.6e-193 679.5 416 84.4
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.1e-192 676.8 411 85.2
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.9e-190 668.7 410 84.6
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.9e-190 668.7 421 83.4
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 6.4e-190 667.5 412 84.0
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.4e-189 666.4 414 84.3
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.4e-189 664.5 421 82.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 9.2e-189 663.7 410 83.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.2e-188 663.3 408 83.6
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 3.5e-188 661.8 409 82.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 7.8e-188 660.6 410 82.9
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.3e-187 659.1 441 79.6
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.5e-186 655.6 423 81.3
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 5.6e-186 654.4 412 81.8
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 5.6e-186 654.4 410 82.4
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.3e-186 654.1 441 78.7
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.2e-185 653.3 411 82.0
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.1e-184 650.2 412 82.3
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.8e-184 649.4 415 81.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.4e-184 649.0 406 82.5
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.0e-184 648.3 412 82.0
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 6.8e-184 647.5 415 81.7
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.5e-183 646.4 410 82.4
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.0e-183 646.0 448 77.5
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 2.0e-183 646.0 408 81.9
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.6e-183 645.6 412 82.3
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.8e-183 644.4 414 79.7
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 9.9e-183 643.7 413 80.9
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.2e-182 642.5 420 80.5
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 6.4e-182 641.0 408 81.6
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 6.4e-182 641.0 411 81.3
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.4e-181 639.8 415 81.0
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.9e-181 639.4 430 78.8
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 4.2e-181 638.3 413 81.8
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 4.2e-181 638.3 412 80.3
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.2e-181 638.3 415 81.4
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.1e-180 636.0 410 80.7
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 7.8e-180 634.0 419 79.5
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.3e-179 633.3 408 80.6
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.0e-179 632.1 410 78.8
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 3.0e-179 632.1 412 78.6
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.9e-179 631.7 410 81.0
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.9e-179 631.7 425 78.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 5.1e-179 631.3 412 81.1
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 6.6e-179 630.9 412 80.8
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 8.7e-179 630.6 410 78.5
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.1e-178 630.2 411 79.8
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.1e-178 630.2 416 79.6
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.9e-178 629.4 412 79.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.5e-178 629.0 413 78.5
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.6e-178 627.9 410 78.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 5.6e-178 627.9 410 78.0
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 9.6e-178 627.1 418 79.7
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.6e-177 626.3 408 80.1
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.6e-177 626.3 413 80.4
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 3.6e-177 625.2 407 80.8
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.8e-177 624.8 413 79.2
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.8e-176 622.9 411 78.1
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 3.1e-176 622.1 415 77.8
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 4.0e-176 621.7 413 79.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 6.9e-176 620.9 416 79.3
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 6.9e-176 620.9 411 77.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.2e-175 620.2 415 77.6
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 2.0e-175 619.4 430 77.2
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.0e-175 619.4 410 77.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 5.8e-175 617.8 410 77.1
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 5.8e-175 617.8 415 76.6
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.3e-174 616.7 416 77.6
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.9e-174 614.8 409 77.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 3.2e-173 612.1 420 78.3
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-172 610.1 409 77.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.6e-172 609.8 410 78.0
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.7e-172 609.0 414 76.8
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.3e-171 605.9 412 76.2
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 3.9e-171 605.1 417 78.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 8.7e-171 604.0 416 75.7
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.9e-170 602.8 420 75.7
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.6e-170 600.5 424 73.3
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.1e-169 599.4 422 75.4
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.8e-169 598.2 414 75.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 6.2e-169 597.8 414 75.1
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.2e-169 597.8 412 77.7
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 8.1e-169 597.4 413 75.5
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 4.5e-167 591.7 359 84.7
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 4.2e-165 585.1 341 88.3
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 7.1e-165 584.3 414 74.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 9.3e-165 583.9 414 74.4
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 4.6e-164 581.6 392 76.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 9.6e-162 573.9 418 73.7
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 8.4e-158 560.8 360 79.7
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 8.4e-158 560.8 360 79.7
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.4e-157 560.1 350 81.4
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-155 552.7 479 66.4
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-155 552.7 479 66.4
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.0e-155 552.4 411 72.7
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 3.0e-155 552.4 413 70.7
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 9.7e-146 520.8 315 83.5
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.5e-143 513.5 419 67.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.5e-143 513.5 357 76.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 3.4e-143 512.3 410 67.3
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 5.0e-142 508.4 358 74.9
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.2e-133 479.2 418 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 1.3e-126 457.2 424 56.8
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.4e-123 447.2 428 61.7
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 4.2e-117 425.6 271 80.8
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 1.5e-114 417.2 407 59.7
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.3e-113 414.1 368 57.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.6e-106 389.8 342 63.5
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.4e-104 384.0 324 67.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.6e-100 369.4 362 60.8
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.1e-84 317.0 318 53.8
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 2.2e-81 307.0 419 43.4
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.1e-80 302.8 261 63.6
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.5e-74 284.3 422 41.5
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.1e-67 260.0 469 35.8
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.1e-67 260.0 472 37.9
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.6e-63 247.7 325 45.2
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 3.1e-59 233.4 134 86.6
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.2e-58 231.5 126 86.5
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.0e-54 216.9 315 41.6
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.9e-48 197.6 344 37.2
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.5e-45 188.0 335 34.9
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-45 187.6 112 82.1
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-45 187.6 112 80.4
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 8.4e-41 172.2 132 68.2
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.5e-40 170.6 131 70.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.9e-37 161.0 98 82.7
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.4e-32 144.8 153 56.2
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.9e-26 122.9 129 54.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.5e-24 117.5 65 89.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.6e-23 113.2 58 84.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.8e-20 103.2 101 56.4
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 9.1e-19 99.0 131 48.1
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.5e-18 98.2 73 69.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-16 89.7 65 69.2
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 7.9e-15 85.9 98 54.1
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 8.8e-14 82.4 58 74.1
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.7e-13 79.7 52 69.2
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.2e-12 77.8 44 84.1
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.3e-11 73.2 59 66.1
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 7.0e-11 72.8 101 41.6
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 2.0e-10 71.2 61 70.5
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 2.6e-10 70.9 63 68.3
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.3e-09 68.6 36 88.9
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.3e-09 68.6 36 88.9
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.3e-09 68.6 36 88.9
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.9e-09 67.4 50 62.0
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-08 65.5 42 78.6
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 88.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 3.2e-08 63.9 101 44.6
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 7.2e-08 62.8 46 69.6
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 1.2e-07 62.0 94 48.9
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.6e-07 61.6 67 52.2
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 4.0e-06 57.0 71 56.3
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 5.2e-06 56.6 120 27.5
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 6.7e-06 56.2 120 27.5
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 6.7e-06 56.2 120 27.5
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 55.8 120 27.5
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 8.8e-06 55.8 120 27.5


User provided reference genes

Program Settings