Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 0.0e+00 1675.6 892 100.0
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 0.0e+00 1146.7 889 72.0
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 0.0e+00 1139.8 894 72.6
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 6.1e-286 987.6 899 64.4
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.2e-259 899.4 891 61.3
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.0e-256 890.6 891 60.4
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 8.5e-256 887.5 891 60.3
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.1e-254 881.3 891 60.6
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 1.5e-236 823.5 927 56.3
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.0e-233 813.1 923 55.7
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 3.6e-222 775.8 820 58.5
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 2.7e-217 759.6 936 53.6
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.7e-195 687.2 792 55.9
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 9.0e-189 664.8 960 48.2
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 4.8e-182 642.5 950 47.2
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 1.1e-181 641.3 933 46.9
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.8e-181 640.6 952 47.5
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.0e-180 637.1 952 47.4
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 3.8e-179 632.9 912 49.1
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.4e-173 613.6 953 45.3
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 6.1e-169 599.0 869 47.6
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 6.9e-165 585.5 935 46.5
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.3e-163 581.3 936 44.9
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.2e-163 580.5 936 44.4
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.4e-162 577.8 936 44.7
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.5e-162 577.0 945 44.6
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 4.4e-159 566.2 944 44.4
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.7e-159 565.8 865 45.4
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 4.1e-157 559.7 935 44.5
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 7.0e-157 558.9 987 42.2
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 1.0e-155 555.1 804 50.7
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 8.0e-153 545.4 943 43.7
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 1.0e-152 545.0 840 46.4
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 4.0e-152 543.1 941 45.0
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 1.4e-149 534.6 928 42.7
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 1.9e-146 524.2 940 43.0
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 7.2e-146 522.3 923 42.7
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 1.6e-145 521.2 892 41.1
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 2.3e-144 517.3 939 42.8
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 5.2e-144 516.2 870 44.4
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.2e-142 510.8 984 39.7
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 3.7e-142 510.0 933 42.2
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 2.4e-141 507.3 919 43.0
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 3.1e-141 506.9 920 42.9
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 5.4e-141 506.1 757 47.4
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 7.0e-141 505.8 898 42.2
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 5.0e-139 499.6 925 41.9
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 9.5e-138 495.4 910 41.2
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.6e-137 494.6 1032 39.9
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 3.0e-136 490.3 913 42.6
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.5e-135 488.0 925 41.4
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 7.5e-135 485.7 899 41.7
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 3.1e-133 480.3 903 42.6
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 4.1e-133 479.9 874 43.6
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 1.2e-132 478.4 963 40.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 3.3e-130 470.3 927 41.5
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 7.3e-130 469.2 936 39.6
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 2.9e-126 457.2 959 41.3
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 6.4e-126 456.1 932 41.4
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 2.3e-123 447.6 911 41.5
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.1e-122 445.3 830 43.0
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 1.9e-122 444.5 934 40.7
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 4.7e-121 439.9 921 40.3
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 5.2e-120 436.4 946 39.4
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 8.9e-120 435.6 923 40.7
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 5.8e-119 433.0 996 39.5
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 4.9e-118 429.9 919 39.3
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 3.2e-117 427.2 890 40.8
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.2e-116 425.2 919 40.0
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 1.7e-115 421.4 921 39.0
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.7e-115 421.4 930 37.0
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 3.0e-115 420.6 847 38.1
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 4.0e-112 410.2 899 38.8
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 2.9e-110 404.1 925 38.1
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 4.9e-110 403.3 928 38.6
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.4e-109 401.0 944 36.5
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.4e-109 401.0 907 38.3
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 9.2e-109 399.1 933 38.7
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 6.0e-108 396.4 936 37.6
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 7.8e-108 396.0 934 36.4
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.3e-106 390.6 948 36.6
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.1e-104 385.6 920 36.7
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 4.0e-104 383.6 938 36.7
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 5.2e-104 383.3 827 39.9
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 2.0e-103 381.3 898 38.0
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 3.5e-100 370.5 940 36.4
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 3.5e-100 370.5 942 37.2
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 3.0e-99 367.5 902 37.7
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.2e-97 362.1 940 36.5
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 6.2e-97 359.8 946 36.8
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 8.1e-97 359.4 890 36.1
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.1e-96 359.0 937 36.3
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 1.8e-96 358.2 937 36.4
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 2.0e-95 354.8 932 36.3
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 4.9e-94 350.1 932 35.9
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 5.4e-93 346.7 996 34.5
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 9.3e-93 345.9 864 35.4
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.0e-91 342.4 806 35.1
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 6.6e-91 339.7 862 36.5
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 2.0e-87 328.2 663 40.9
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 2.3e-83 314.7 923 33.3
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.5e-79 302.0 880 34.3
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.5e-79 300.4 901 33.4
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 5.5e-77 293.5 922 32.3
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 1.3e-73 282.3 916 34.1
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 6.9e-72 276.6 1036 31.0
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 6.9e-64 250.0 909 31.6
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.2e-62 245.0 423 41.1
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.2e-61 241.1 423 40.7
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.4e-59 235.7 890 31.9
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.7e-59 233.4 811 30.9
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.3e-56 223.8 451 40.1
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 1.1e-50 206.1 159 68.6
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 5.0e-46 190.7 262 49.6
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 5.0e-38 164.1 162 57.4
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.5e-34 152.5 298 46.0
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.2e-31 142.9 1046 27.6
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 2.5e-29 135.2 242 40.1
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 2.7e-28 131.7 246 41.1
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 3.4e-26 124.8 163 49.1
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.4e-24 119.4 164 43.3
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.9e-21 109.0 471 32.9
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.2e-20 106.3 101 58.4
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 2.6e-18 98.6 77 63.6
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.7e-14 85.9 170 37.6
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 4.7e-12 77.8 187 30.5
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 3.1e-11 75.1 280 27.9
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 7.5e-10 70.5 869 25.9
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 7.0e-08 63.9 43 58.1


User provided reference genes

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