Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.0e-81 305.8 169 100.0
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.7e-59 231.9 171 82.5
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.4e-58 229.2 169 82.8
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 2.0e-52 209.5 175 75.4
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.7e-51 205.3 174 74.7
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.1e-50 200.7 174 73.6
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.7e-49 199.1 174 73.6
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.5e-49 198.4 174 73.6
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 7.2e-47 191.0 174 72.4
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.6e-36 156.0 181 59.7
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 4.4e-36 155.2 179 60.9
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.0e-33 146.4 178 58.4
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.7e-32 143.3 177 58.8
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.3e-31 139.0 126 69.8
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 5.2e-29 131.7 170 54.1
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 5.2e-29 131.7 174 57.5
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.0e-28 129.8 184 57.1
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.6e-28 129.4 169 58.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 3.4e-28 129.0 176 54.5
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.9e-26 123.2 176 54.5
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.4e-26 122.9 181 52.5
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.2e-26 122.5 173 55.5
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 9.2e-26 120.9 134 60.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 9.2e-26 120.9 170 52.4
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.2e-25 120.6 173 55.5
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 2.7e-25 119.4 170 54.7
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 7.8e-25 117.9 165 53.3
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.0e-24 117.5 176 52.3
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.0e-24 117.5 170 50.6
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.3e-24 117.1 132 61.4
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.3e-24 117.1 132 61.4
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.3e-24 116.3 102 72.5
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 3.0e-24 115.9 104 73.1
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 3.9e-24 115.5 132 62.9
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.0e-24 115.2 128 62.5
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 8.6e-24 114.4 103 72.8
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.6e-24 114.4 172 52.3
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.1e-23 114.0 103 72.8
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.9e-23 113.2 124 63.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.3e-23 112.5 176 54.5
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 7.3e-23 111.3 174 52.3
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 9.5e-23 110.9 176 51.1
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-22 110.5 169 55.0
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.6e-22 110.2 127 60.6
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.6e-22 110.2 147 56.5
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.6e-22 110.2 136 58.8
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.1e-22 109.8 127 60.6
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.1e-22 109.8 107 70.1
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.8e-22 109.4 176 52.8
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 4.7e-22 108.6 179 53.6
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 6.2e-22 108.2 113 65.5
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 6.2e-22 108.2 154 52.6
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.0e-22 107.8 180 53.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.1e-21 107.5 172 47.1
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.8e-21 106.7 160 53.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 3.1e-21 105.9 103 65.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 4.0e-21 105.5 126 61.9
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 6.8e-21 104.8 101 69.3
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 6.8e-21 104.8 133 57.9
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 6.8e-21 104.8 101 71.3
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.8e-21 104.8 172 50.6
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 6.8e-21 104.8 181 51.9
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 8.9e-21 104.4 123 62.6
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.2e-20 104.0 128 61.7
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 2.0e-20 103.2 172 50.0
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.6e-20 102.8 126 58.7
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.6e-20 102.8 172 50.6
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.4e-20 102.4 147 48.3
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.4e-20 102.4 135 56.3
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 4.4e-20 102.1 173 48.6
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.4e-20 102.1 171 50.3
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 7.5e-20 101.3 169 50.3
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.8e-20 100.9 169 50.3
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 9.8e-20 100.9 119 63.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.3e-19 100.5 97 74.2
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.3e-19 100.5 97 74.2
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.3e-19 100.5 174 51.1
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.9e-19 98.6 174 48.9
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 4.9e-19 98.6 172 47.7
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.9e-19 98.6 170 49.4
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 8.3e-19 97.8 107 66.4
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.1e-18 97.4 161 50.9
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.9e-18 96.7 123 56.9
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.4e-18 96.3 106 65.1
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 5.4e-18 95.1 176 46.6
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 7.0e-18 94.7 176 48.9
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 9.2e-18 94.4 126 60.3
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.6e-17 93.6 108 64.8
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 4.6e-17 92.0 199 44.7
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.6e-17 92.0 170 48.2
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.0e-17 91.7 110 63.6
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 7.8e-17 91.3 108 63.0
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 7.8e-17 91.3 121 55.4
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 7.8e-17 91.3 199 44.7
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 7.8e-17 91.3 99 65.7
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.0e-16 90.9 99 66.7
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.0e-16 90.9 206 42.2
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.3e-16 90.5 108 63.0
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.7e-16 90.1 87 70.1
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 2.3e-16 89.7 119 58.0
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 3.9e-16 89.0 124 54.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 3.9e-16 89.0 173 47.4
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.9e-16 89.0 108 62.0
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 3.9e-16 89.0 101 61.4
FAN11G3625 Fragaria x ananassa HOM05D019050 ORTHO05D035443 3.9e-16 89.0 147 49.7
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 5.1e-16 88.6 208 42.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.1e-16 88.6 176 44.3
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 8.6e-16 87.8 172 47.7
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.1e-15 87.4 86 72.1
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.9e-15 86.7 179 48.0
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.5e-15 86.3 145 49.0
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.5e-15 86.3 149 48.3
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 3.3e-15 85.9 94 64.9
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 3.3e-15 85.9 94 66.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 3.3e-15 85.9 94 66.0
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 4.3e-15 85.5 94 66.0
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 4.3e-15 85.5 94 66.0
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 4.3e-15 85.5 94 63.8
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 5.6e-15 85.1 123 56.1
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.2e-14 84.0 99 62.6
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.2e-14 84.0 87 64.4
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.2e-14 84.0 87 64.4
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.2e-14 84.0 151 49.0
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.2e-14 84.0 104 63.5
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 1.6e-14 83.6 94 62.8
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.6e-14 83.6 98 61.2
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.6e-14 82.4 95 64.2
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.6e-14 82.4 170 45.9
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 6.2e-14 81.6 108 61.1
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 8.1e-14 81.3 168 44.0
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 2.3e-13 79.7 92 65.2
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 4.0e-13 79.0 98 60.2
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 8.9e-13 77.8 119 57.1
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.2e-12 77.4 97 59.8
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.2e-12 77.4 106 58.5
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.5e-12 77.0 115 53.9
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.6e-12 76.3 189 41.8
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 5.8e-12 75.1 94 57.4
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 7.5e-12 74.7 120 54.2
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 9.9e-12 74.3 121 56.2
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.2e-11 73.2 68 73.5
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.9e-11 72.8 68 75.0
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.7e-11 72.4 109 56.0
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 3.7e-11 72.4 177 42.9
FAN21G1050 Fragaria x ananassa HOM05D019050 ORTHO05D204215 6.4e-11 71.6 196 42.9
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.3e-11 71.2 85 55.3
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.9e-10 70.1 72 68.1
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 3.2e-10 69.3 105 48.6
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 7.1e-10 68.2 84 56.0
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.7e-09 66.2 68 69.1
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.6e-09 65.5 68 61.8
FAN25G0864 Fragaria x ananassa HOM05D019050 ORTHO05D035443 6.0e-09 65.1 146 41.1
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.3e-08 63.9 96 54.2
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 8.6e-08 61.2 163 39.3
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 1.1e-07 60.8 152 40.1
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 1.5e-07 60.5 154 40.3
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 5.6e-07 58.5 111 41.4
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 3.6e-06 55.8 107 50.5
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 4.7e-06 55.5 160 41.2


User provided reference genes

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