Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 4.6e-55 217.6 108 100.0
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.1e-32 143.3 112 67.9
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 7.2e-32 140.6 112 67.0
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.2e-32 140.6 112 67.0
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 7.2e-32 140.6 112 67.0
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.2e-32 140.6 112 67.0
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.4e-27 125.6 103 64.1
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 7.2e-24 114.0 115 57.4
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 1.2e-23 113.2 110 60.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 3.0e-22 108.6 109 54.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.7e-20 101.7 102 53.9
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 6.9e-19 97.4 114 56.1
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.0e-18 95.9 106 50.0
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 2.0e-18 95.9 112 50.9
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 7.7e-18 94.0 112 50.0
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.7e-17 92.8 62 80.6
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 2.2e-17 92.4 120 50.8
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 2.9e-17 92.0 99 56.6
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 2.9e-17 92.0 113 54.0
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 8.5e-17 90.5 112 48.2
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.4e-16 89.7 89 58.4
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 7.2e-16 87.4 108 49.1
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 1.6e-15 86.3 123 48.8
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.1e-15 85.9 117 49.6
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 8.0e-15 84.0 109 50.5
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 1.5e-13 79.7 104 50.0
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 2.0e-13 79.3 109 49.5
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.6e-13 79.0 105 47.6
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 5.7e-13 77.8 105 43.8
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 5.7e-13 77.8 105 43.8
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 7.4e-13 77.4 104 45.2
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 9.7e-13 77.0 100 46.0
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 9.7e-13 77.0 108 47.2
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 6.3e-12 74.3 105 41.9
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.1e-11 73.6 85 50.6
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.4e-11 72.4 79 57.0
QL08p003109 Quercus lobata HOM05D006736 ORTHO05D008459 3.1e-11 72.0 81 50.6
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 4.1e-11 71.6 88 50.0
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 4.1e-11 71.6 94 47.9
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 5.3e-11 71.2 86 52.3
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 1.2e-10 70.1 99 41.4
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 1.6e-10 69.7 106 43.4
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 2.0e-10 69.3 86 50.0
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.6e-10 68.9 106 43.4
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 4.5e-10 68.2 85 49.4
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 4.5e-10 68.2 77 48.1
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.5e-10 68.2 90 48.9
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 5.9e-10 67.8 113 45.1
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 5.9e-10 67.8 85 49.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 7.7e-10 67.4 63 60.3
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.7e-10 67.4 96 44.8
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 7.7e-10 67.4 96 44.8
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.0e-09 67.0 66 57.6
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.7e-09 66.2 57 63.2
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 1.7e-09 66.2 86 48.8
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 1.7e-09 66.2 86 48.8
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 1.7e-09 66.2 57 63.2
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.7e-09 66.2 113 45.1
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.7e-09 66.2 105 42.9
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 2.2e-09 65.9 97 43.3
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.9e-09 65.5 63 58.7
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 2.9e-09 65.5 91 46.2
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.9e-09 65.5 67 56.7
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 3.8e-09 65.1 104 46.2
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 3.8e-09 65.1 72 52.8
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 3.8e-09 65.1 70 57.1
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.8e-09 65.1 96 43.8
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 6.5e-09 64.3 97 45.4
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 8.5e-09 63.9 66 60.6
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.1e-08 63.5 86 50.0
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.1e-08 63.5 91 45.1
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 1.9e-08 62.8 63 58.7
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 1.9e-08 62.8 99 43.4
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.9e-08 62.8 62 61.3
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 1.9e-08 62.8 84 48.8
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.5e-08 62.4 61 52.5
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.5e-08 62.4 111 37.8
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 3.2e-08 62.0 82 47.6
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.2e-08 62.0 76 47.4
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 3.2e-08 62.0 52 65.4
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 4.2e-08 61.6 98 42.9
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 5.5e-08 61.2 68 54.4
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 5.5e-08 61.2 62 58.1
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 7.2e-08 60.8 92 41.3
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 7.2e-08 60.8 97 45.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 7.2e-08 60.8 49 67.3
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.6e-07 59.7 64 51.6
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.6e-07 59.7 106 38.7
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 2.1e-07 59.3 103 41.7
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 2.1e-07 59.3 87 43.7
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.1e-07 59.3 101 40.6
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.7e-07 58.9 108 39.8
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 3.6e-07 58.5 92 44.6
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 4.7e-07 58.2 95 42.1
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 4.7e-07 58.2 93 41.9
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 6.1e-07 57.8 97 44.3
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 8.0e-07 57.4 112 39.3
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 8.0e-07 57.4 80 47.5
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 8.0e-07 57.4 83 47.0
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 8.0e-07 57.4 97 44.3
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 1.0e-06 57.0 97 42.3
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.0e-06 57.0 99 39.4
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.4e-06 56.6 43 65.1
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.4e-06 56.6 43 65.1
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.4e-06 56.6 97 42.3
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.8e-06 56.2 90 41.1
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.8e-06 56.2 59 57.6
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 2.3e-06 55.8 98 42.9
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 2.3e-06 55.8 98 42.9
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 2.3e-06 55.8 98 42.9
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 2.3e-06 55.8 98 42.9
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 2.3e-06 55.8 98 42.9
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 3.0e-06 55.5 85 43.5
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 6.7e-06 54.3 94 41.5
ClCG10G004500 Citrullus lanatus HOM05D006736 ORTHO05D008459 8.8e-06 53.9 82 45.1


User provided reference genes

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