Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 6.5e-111 404.1 203 100.0
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 4.1e-105 384.8 203 92.6
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 4.1e-105 384.8 203 92.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.1e-102 376.7 203 89.7
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-102 376.7 203 89.7
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 9.4e-102 373.6 203 88.2
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.7e-101 372.1 203 88.2
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 3.5e-96 355.1 204 84.8
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 7.7e-96 354.0 203 85.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.3e-95 352.4 205 85.4
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 7.2e-94 347.4 204 82.4
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.4e-91 338.6 227 76.7
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 4.4e-91 338.2 204 79.9
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 5.7e-91 337.8 204 79.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.3e-90 336.7 204 78.9
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.9e-90 334.7 204 78.4
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 4.9e-90 334.7 203 80.8
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 2.0e-88 329.3 204 79.9
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 2.0e-88 329.3 206 78.2
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 3.5e-88 328.6 202 77.7
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.3e-87 325.9 205 79.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.9e-87 325.1 206 76.2
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 3.9e-87 325.1 203 78.8
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.9e-86 322.8 204 77.0
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.5e-86 322.4 203 75.9
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 9.5e-86 320.5 204 76.0
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.2e-85 320.1 207 75.8
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.1e-85 319.3 205 77.1
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.6e-85 318.5 205 76.6
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 6.1e-85 317.8 205 76.6
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 6.1e-85 317.8 203 76.4
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.0e-84 317.0 204 76.5
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.4e-84 316.6 204 74.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.1e-84 315.5 206 75.7
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.8e-84 314.3 204 74.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.8e-84 314.3 205 76.1
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 6.8e-84 314.3 204 73.0
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.2e-83 313.5 203 73.9
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.2e-83 313.5 203 76.4
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.5e-83 313.2 205 75.1
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 74.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 2.0e-83 312.8 199 73.9
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.6e-83 312.4 205 76.1
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.6e-83 312.4 207 73.4
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 4.4e-83 311.6 205 75.6
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 4.4e-83 311.6 201 74.1
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.8e-83 311.2 205 75.1
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.8e-83 311.2 203 75.9
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 5.8e-83 311.2 204 75.0
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.3e-82 310.1 203 75.4
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.3e-82 310.1 201 74.6
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.2e-82 309.3 201 74.1
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 4.9e-82 308.1 202 72.3
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 4.9e-82 308.1 202 72.3
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 4.9e-82 308.1 202 75.2
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.9e-82 308.1 205 73.2
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 8.3e-82 307.4 200 73.5
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 8.3e-82 307.4 205 73.2
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 2.4e-81 305.8 202 72.8
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 3.2e-81 305.4 200 71.5
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 3.2e-81 305.4 204 75.0
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 4.1e-81 305.1 205 73.7
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.1e-81 305.1 205 72.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 5.4e-81 304.7 205 72.7
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 7.0e-81 304.3 201 72.1
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 7.0e-81 304.3 203 72.9
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 9.2e-81 303.9 202 73.3
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 71.4
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 2.0e-80 302.8 203 71.9
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 2.0e-80 302.8 203 71.9
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 2.7e-80 302.4 200 72.0
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 3.5e-80 302.0 203 71.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 3.5e-80 302.0 203 71.4
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 4.6e-80 301.6 203 71.9
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 4.6e-80 301.6 203 71.9
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 4.6e-80 301.6 193 77.7
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 7.8e-80 300.8 204 70.6
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.0e-79 300.4 194 74.2
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.7e-79 299.7 203 70.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.3e-79 299.3 204 73.5
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 71.4
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 5.0e-79 298.1 203 70.9
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 8.6e-79 297.4 203 70.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.1e-78 297.0 203 73.9
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.1e-78 297.0 203 70.9
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.5e-78 296.6 203 70.0
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.5e-78 296.6 201 72.1
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.5e-78 295.8 207 68.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 70.9
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 70.9
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 70.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 3.3e-78 295.4 205 71.7
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 4.3e-78 295.0 203 69.0
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 4.3e-78 295.0 203 69.0
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 4.3e-78 295.0 203 70.9
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 7.3e-78 294.3 202 69.8
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 7.3e-78 294.3 204 72.1
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.2e-77 293.5 203 70.4
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.6e-77 293.1 213 68.1
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.6e-77 293.1 204 68.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.6e-77 293.1 205 67.3
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.6e-77 292.0 256 61.3
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 4.7e-77 291.6 203 70.4
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 8.1e-77 290.8 201 68.7
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.1e-76 290.4 205 66.8
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.1e-76 290.4 196 71.9
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 6.8e-76 287.7 201 69.2
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 8.9e-76 287.3 201 68.7
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.5e-75 286.6 209 68.4
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 7.5e-75 284.3 205 68.8
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.4e-74 281.2 205 67.8
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.1e-73 280.4 205 65.4
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.4e-73 280.0 203 69.5
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.7e-72 275.8 204 68.6
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.3e-68 262.7 192 65.1
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-65 253.8 146 86.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.4e-65 253.4 205 60.5
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 5.4e-65 251.5 204 58.8
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 4.6e-64 248.4 207 58.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 6.0e-64 248.1 139 87.1
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 8.9e-60 234.2 208 55.8
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 6.4e-58 228.0 213 54.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-57 227.3 148 79.7
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.5e-56 222.2 209 55.5
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.5e-54 216.1 205 59.0
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.3e-53 213.8 209 51.7
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.6e-53 213.4 137 76.6
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.6e-53 213.4 141 75.2
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 9.3e-49 197.6 145 70.3
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.1e-46 190.7 166 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 6.2e-45 184.9 205 47.3
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.8e-42 175.6 131 65.6
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 8.7e-39 164.5 181 52.5
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 3.4e-27 125.9 191 35.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 8.4e-26 121.3 196 38.3
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 7.2e-25 118.2 99 60.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.0e-23 112.8 134 47.8
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.0e-23 112.8 128 43.8
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.5e-22 109.8 66 75.8
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.2e-21 106.7 75 65.3
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.8e-21 106.3 69 72.5
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 8.2e-21 104.8 198 36.9
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.7e-19 98.2 69 73.9
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.1e-16 90.1 63 73.0
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.8e-15 87.0 51 78.4
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 4.8e-13 79.0 72 62.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.3e-10 70.9 50 70.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.3e-10 70.9 50 70.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.7e-10 70.5 68 54.4
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 6.5e-10 68.6 44 65.9
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 6.1e-08 62.0 69 42.0
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 1.5e-06 57.4 84 50.0


User provided reference genes

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