Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.2e-137 491.5 277 100.0
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 7.7e-131 470.7 277 94.6
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.7e-131 470.7 277 94.6
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.3e-130 469.2 277 94.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-129 466.8 277 93.9
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 3.3e-129 465.3 277 93.1
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 8.0e-128 460.7 277 92.1
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 4.0e-127 458.4 277 90.3
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.8e-127 457.6 277 90.3
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.2e-126 456.8 277 89.9
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.2e-126 456.8 277 90.3
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.5e-126 456.4 277 92.1
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 91.7
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 9.8e-126 453.8 277 89.5
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.2e-125 452.6 277 89.5
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.7e-125 451.8 277 89.2
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 89.2
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 92.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.6
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.3
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 90.3
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 89.2
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 88.8
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 90.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 89.9
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 89.2
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 7.0e-124 447.6 277 88.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 87.7
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.1
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.2e-123 446.8 276 90.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 88.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 87.0
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 89.2
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 88.8
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 88.1
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 88.1
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 88.8
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 87.4
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 88.1
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.1
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 88.8
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 5.0e-122 441.4 274 88.0
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 87.0
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 85.9
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 87.0
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.9e-121 439.5 274 87.6
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 86.3
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 88.1
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.3e-121 438.3 301 81.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 87.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 87.0
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 86.6
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 86.3
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 85.9
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.6e-120 436.4 321 78.2
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.1e-120 436.0 276 88.4
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 86.3
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.4
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 89.9
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 87.7
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 3.1e-119 432.2 278 86.0
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 85.6
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 84.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.8e-119 431.0 278 85.6
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.2
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 85.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 5.8e-118 427.9 275 86.9
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 5.8e-118 427.9 275 86.9
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.3e-117 426.8 275 85.8
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.2
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 81.9
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 4.9e-117 424.9 261 90.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.1e-116 421.8 283 82.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.1e-116 421.8 277 85.6
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 5.4e-116 421.4 280 85.4
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.9e-114 415.2 318 74.5
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.3e-113 411.8 261 86.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 4.3e-113 411.8 277 83.4
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.2e-112 410.2 261 85.8
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.1e-112 409.5 278 82.4
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.2e-112 407.9 320 73.1
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 8.1e-112 407.5 277 82.7
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 5.2e-111 404.8 270 84.8
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.2e-111 404.8 274 83.9
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.2e-110 403.7 277 82.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.9e-109 399.1 274 77.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 3.7e-109 398.7 299 72.9
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 6.4e-109 397.9 264 84.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 6.4e-109 397.9 275 79.3
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.9e-108 396.4 318 68.2
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.9e-108 396.4 278 78.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 4.1e-108 395.2 255 87.1
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.1e-107 392.9 278 78.8
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.1e-107 392.9 273 78.8
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.3e-106 390.2 269 77.7
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 4.3e-105 385.2 278 76.6
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.8e-104 382.5 277 78.0
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.6e-104 382.1 256 84.0
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 6.2e-104 381.3 256 81.6
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 6.2e-104 381.3 271 79.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-103 379.8 260 81.2
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-103 379.4 353 62.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.2e-102 377.1 262 79.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.7e-101 372.1 275 76.7
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-99 366.7 331 67.1
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.0e-98 364.0 230 88.3
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.9e-97 359.8 230 84.3
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 2.4e-95 352.8 222 87.8
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 8.9e-95 350.9 222 87.8
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.4e-92 343.6 313 68.4
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 5.4e-92 341.7 277 65.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.1e-91 339.7 277 69.0
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.5e-91 339.0 269 72.5
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.4e-87 327.0 250 74.4
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.4e-87 327.0 250 74.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.8e-87 326.6 224 83.0
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 3.4e-86 322.4 281 67.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 3.4e-86 322.4 274 63.9
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.9e-85 319.3 284 66.9
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.5e-83 312.4 274 66.8
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.9e-82 308.9 274 66.4
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.2e-70 270.8 258 60.1
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.7e-67 259.6 187 77.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.6e-67 258.8 287 52.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-65 252.3 280 53.9
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 5.1e-58 228.8 155 74.2
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.9e-57 226.9 145 89.0
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-57 225.7 181 75.7
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.9e-55 218.4 138 82.6
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.5e-54 217.2 129 83.7
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 7.9e-51 204.9 132 80.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.1e-47 191.4 300 44.3
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 8.8e-42 174.9 97 91.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 7.4e-41 171.8 106 82.1
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 6.3e-40 168.7 90 94.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.5e-36 156.8 84 94.0
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.0e-34 149.4 152 57.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.8e-29 132.9 80 81.2
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 8.5e-29 131.7 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 8.5e-29 131.7 74 89.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 2.5e-28 130.2 80 81.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 9.1e-23 111.7 258 36.4
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-20 104.4 158 46.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.3e-18 97.1 158 43.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.3e-18 97.1 172 39.0
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 2.0e-17 94.0 150 38.7
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 5.7e-17 92.4 123 49.6
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 5.7e-17 92.4 157 42.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.8e-17 91.7 71 83.1
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.3e-16 91.3 158 39.9
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 2.2e-16 90.5 57 75.4
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-15 87.8 73 69.9
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.8e-15 87.4 155 36.8
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.1e-15 86.7 71 76.1
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 46 89.1
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.5e-12 77.8 162 37.0
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.9e-12 77.4 157 40.1
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-12 76.3 46 82.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 5.6e-12 75.9 46 76.1
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 6.1e-11 72.4 43 81.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.4e-09 66.6 263 30.8
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.4e-08 62.4 140 40.7
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 1.2e-06 58.2 60 55.0


User provided reference genes

Program Settings