Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.9e-104 382.5 187 100.0
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 6.9e-99 364.0 184 94.6
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 1.7e-97 359.4 184 92.9
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.2e-95 353.2 184 91.3
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 2.1e-95 352.4 184 90.8
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.1e-95 352.4 184 90.8
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 3.5e-95 351.7 184 90.2
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.0e-94 348.6 184 90.8
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 5.1e-94 347.8 184 89.1
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 7.4e-93 344.0 184 85.9
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 4.8e-92 341.3 184 86.4
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 4.8e-92 341.3 184 87.0
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 6.2e-92 340.9 184 87.0
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 8.2e-92 340.5 184 87.5
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 1.1e-91 340.1 184 85.3
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.1e-91 340.1 184 85.3
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.1e-91 340.1 184 84.8
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.4e-91 339.7 183 85.2
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.4e-91 339.7 184 86.4
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 2.4e-91 339.0 184 84.8
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 2.4e-91 339.0 184 85.9
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 4.1e-91 338.2 183 85.8
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 5.3e-91 337.8 184 84.2
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 5.3e-91 337.8 184 86.4
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 6.9e-91 337.4 184 84.8
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.5e-90 336.3 184 85.3
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 2.0e-90 335.9 184 83.7
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 2.6e-90 335.5 184 83.2
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 3.4e-90 335.1 184 84.2
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 5.8e-90 334.3 184 83.2
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 5.8e-90 334.3 184 84.2
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 83.3
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 5.8e-90 334.3 184 84.8
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 7.6e-90 334.0 184 83.7
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.0e-89 333.6 184 82.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.3e-89 333.2 184 84.2
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 1.7e-89 332.8 184 84.2
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 2.2e-89 332.4 182 84.1
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 2.2e-89 332.4 184 83.2
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.9e-89 332.0 184 83.7
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 2.9e-89 332.0 183 83.6
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 5.0e-89 331.3 184 82.1
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 6.5e-89 330.9 184 84.8
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 6.5e-89 330.9 184 84.2
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 6.5e-89 330.9 184 83.7
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 8.4e-89 330.5 180 85.0
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 8.4e-89 330.5 184 83.2
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 8.4e-89 330.5 184 83.7
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 8.4e-89 330.5 184 82.1
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.4e-88 329.7 180 83.9
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 180 83.9
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 184 81.5
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.9e-88 329.3 184 81.5
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 2.5e-88 328.9 184 81.5
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 4.2e-88 328.2 180 84.4
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.5e-88 327.8 184 80.4
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.5e-88 327.8 184 80.4
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 7.1e-88 327.4 184 81.0
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 9.3e-88 327.0 180 82.8
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.6e-87 326.2 183 82.5
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 1.6e-87 326.2 184 81.5
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 2.1e-87 325.9 184 81.5
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 4.6e-87 324.7 184 81.0
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 4.6e-87 324.7 183 83.6
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 4.6e-87 324.7 184 81.0
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.6e-87 324.7 184 79.9
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 4.6e-87 324.7 184 79.9
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 6.1e-87 324.3 184 81.0
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 79.9
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 83.2
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 1.3e-86 323.2 184 80.4
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.8e-86 322.8 183 82.5
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.8e-86 322.8 183 82.0
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.3e-86 322.4 183 81.4
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 3.0e-86 322.0 182 80.2
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 3.9e-86 321.6 178 83.7
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 79.9
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.9e-85 319.3 184 78.3
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 81.7
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 3.3e-85 318.5 180 81.1
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 3.3e-85 318.5 180 81.1
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 3.3e-85 318.5 180 81.1
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 4.3e-85 318.2 180 81.1
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 4.3e-85 318.2 180 81.7
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.3e-85 318.2 184 79.9
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 4.3e-85 318.2 185 77.3
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 4.3e-85 318.2 185 77.3
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 5.7e-85 317.8 180 81.1
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.3e-84 316.6 184 82.6
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 2.2e-84 315.8 180 80.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 2.2e-84 315.8 180 80.0
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 2.2e-84 315.8 180 80.0
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.2e-84 315.8 184 76.6
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 3.7e-84 315.1 180 80.6
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 4.8e-84 314.7 180 79.4
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 4.8e-84 314.7 172 84.3
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 6.3e-84 314.3 180 79.4
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 8.2e-84 313.9 180 80.0
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 8.2e-84 313.9 180 80.0
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 1.1e-83 313.5 180 80.0
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.4e-83 313.2 180 79.4
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 1.5e-82 309.7 184 80.4
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 3.4e-82 308.5 184 79.9
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 6.5e-81 304.3 186 75.3
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 8.5e-81 303.9 186 78.5
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 5.5e-80 301.2 184 75.5
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 3.0e-78 295.4 179 76.5
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 8.8e-78 293.9 184 76.1
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 1.1e-77 293.5 184 76.1
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 2.0e-77 292.7 179 76.0
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 5.7e-77 291.2 184 75.0
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 9.7e-77 290.4 173 78.6
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 8.2e-76 287.3 184 74.5
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 8.2e-76 287.3 184 71.2
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 1.8e-75 286.2 184 73.9
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 1.8e-75 286.2 184 73.4
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 5.3e-75 284.6 184 73.4
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.5e-74 283.1 184 72.3
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 2.0e-74 282.7 184 72.8
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 1.8e-67 259.6 183 65.6
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 2.8e-60 235.7 183 54.1
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 7.2e-56 221.1 180 55.0
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 9.4e-56 220.7 191 55.0
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.1e-55 219.5 172 65.1
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 2.8e-52 209.1 182 52.7
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 6.3e-52 208.0 177 51.4
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.4e-51 206.8 183 49.7
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.8e-43 179.9 151 56.3
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 7.7e-42 174.5 180 50.6
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 2.0e-37 159.8 89 85.4
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 8.6e-33 144.4 194 43.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.9e-27 126.7 92 66.3
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.7e-20 103.6 157 33.8
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 2.4e-19 99.8 54 83.3
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 3.6e-07 59.3 88 35.2


User provided reference genes

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