Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 6.8e-204 713.8 361 100.0
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.8e-180 636.0 355 88.5
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 5.8e-179 630.9 359 86.9
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 1.1e-177 626.7 359 85.8
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.9e-170 602.1 362 83.1
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 5.7e-166 587.8 356 81.7
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.2e-163 580.1 357 80.7
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 4.5e-163 578.2 356 80.1
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 2.1e-160 569.3 357 78.7
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 6.7e-159 564.3 358 76.8
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 3.3e-158 562.0 359 77.4
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.8e-157 558.9 362 78.7
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 3.7e-157 558.5 359 76.3
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 5.3e-156 554.7 359 75.8
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 6.9e-156 554.3 356 77.5
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.2e-155 553.5 357 74.2
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.2e-155 553.5 359 76.0
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 7.7e-155 550.8 359 77.2
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 2.9e-154 548.9 359 74.7
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 3.8e-154 548.5 354 75.7
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.0e-154 548.1 357 74.2
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.9e-153 546.2 359 75.2
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 5.5e-153 544.7 387 71.6
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.6e-152 543.1 359 73.3
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 4.7e-152 541.6 359 73.0
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 1.0e-151 540.4 359 75.2
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 8.8e-151 537.3 359 71.3
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.1e-150 537.0 355 73.8
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 2.6e-150 535.8 361 74.5
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.6e-150 535.8 359 71.3
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 3.3e-150 535.4 359 72.4
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 5.7e-150 534.6 355 74.1
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 7.4e-150 534.3 360 71.4
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 2.2e-149 532.7 355 74.1
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.8e-149 532.3 360 74.2
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 2.8e-149 532.3 359 70.8
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 2.8e-149 532.3 355 73.2
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 4.8e-149 531.6 359 71.6
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.3e-149 531.2 359 74.1
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.3e-149 531.2 359 74.1
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.8e-148 529.6 355 73.2
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 3.1e-148 528.9 357 73.4
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 1.6e-147 526.6 355 73.5
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 2.0e-147 526.2 356 72.5
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.6e-147 525.8 356 72.5
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 2.6e-147 525.8 353 73.4
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 5.9e-147 524.6 359 71.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 7.7e-147 524.2 359 73.5
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 2.2e-146 522.7 357 72.3
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.9e-146 522.3 356 71.3
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 6.5e-146 521.2 356 71.6
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 8.5e-146 520.8 357 71.4
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 1.1e-145 520.4 359 71.9
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.5e-145 520.0 357 71.7
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.9e-145 519.6 355 71.8
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 7.2e-145 517.7 356 71.6
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 3.6e-144 515.4 355 71.3
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 6.1e-144 514.6 355 71.5
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 6.1e-144 514.6 355 71.5
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 8.0e-144 514.2 355 71.3
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.4e-143 513.5 355 71.3
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 2.3e-143 512.7 357 71.1
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 7.5e-142 507.7 354 71.2
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 2.2e-141 506.1 355 72.4
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 5.3e-140 501.5 357 69.2
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 7.0e-140 501.1 357 68.3
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 2.0e-139 499.6 317 78.2
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.7e-139 499.2 357 68.6
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 8.5e-138 494.2 356 68.8
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.2e-137 492.3 386 64.5
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 4.0e-135 485.3 358 67.0
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 5.7e-134 481.5 355 66.5
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.7e-133 479.9 359 66.9
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.7e-133 479.9 359 66.9
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.1e-132 477.2 359 66.6
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.7e-130 469.9 354 64.4
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.2e-130 469.5 355 67.3
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.1e-129 467.2 359 65.5
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.2e-128 463.8 359 65.5
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 8.8e-127 457.6 355 65.9
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.2e-126 457.2 357 63.6
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 4.4e-126 455.3 472 54.2
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 9.8e-126 454.1 357 62.7
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.7e-125 453.4 374 63.4
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 8.3e-125 451.1 378 62.4
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 7.7e-123 444.5 354 62.4
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.0e-122 444.1 352 65.3
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 8.9e-119 431.0 354 63.3
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 2.4e-116 422.9 356 59.3
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.0e-106 389.4 257 73.9
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.9e-105 386.7 358 56.7
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.8e-104 382.9 251 72.1
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 3.6e-104 382.5 255 72.2
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.9e-100 370.2 250 71.6
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.6e-99 367.1 351 50.1
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.2e-96 357.5 296 64.5
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.9e-93 345.5 357 49.0
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.9e-90 335.9 377 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.5e-89 333.2 361 46.8
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 9.6e-89 331.3 364 48.9
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.4e-87 326.6 357 51.3
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.4e-86 322.4 346 47.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 4.3e-81 305.8 200 74.5
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 9.6e-81 304.7 203 70.4
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.4e-78 296.2 346 44.8
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.6e-75 285.8 346 42.2
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.0e-71 271.6 354 42.1
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.0e-71 271.6 356 42.7
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 6.5e-61 238.8 149 81.2
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 7.7e-46 188.7 148 64.9
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 5.7e-41 172.6 183 55.2
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.7e-40 171.0 127 68.5
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-39 168.3 237 44.7
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.2e-38 164.9 402 31.6
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.6e-33 147.1 104 67.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 9.7e-33 145.2 153 55.6
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 7.0e-31 139.0 105 66.7
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.2e-29 134.0 90 73.3
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 8.5e-29 132.1 359 29.0
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 7.2e-28 129.0 135 54.8
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 7.2e-28 129.0 93 68.8
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 3.0e-26 123.6 92 67.4
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 5.3e-23 112.8 98 60.2
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.5e-20 104.8 88 63.6
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.2e-20 103.2 88 62.5
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 2.1e-19 100.9 99 54.5
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 2.1e-19 100.9 99 54.5
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 8.0e-19 99.0 136 46.3
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.1e-15 86.7 94 53.2
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.1e-12 78.6 49 69.4
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 1.4e-10 71.6 77 54.5


User provided reference genes

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