Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 6.0e-125 451.1 260 100.0
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 8.7e-100 367.5 260 82.3
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 1.2e-93 347.1 260 78.5
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 6.0e-93 344.7 260 79.2
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.4e-83 311.2 260 72.7
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.6e-82 310.1 260 73.5
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.3e-81 305.1 225 78.2
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.2e-80 303.9 259 66.8
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.2e-79 299.7 261 66.7
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.4e-78 297.0 269 67.7
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.3e-76 289.7 241 69.7
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 8.7e-76 287.7 260 63.8
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.9e-75 286.6 245 73.9
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 2.5e-75 286.2 261 67.0
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 3.3e-75 285.8 260 66.5
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.3e-75 285.8 260 66.2
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.3e-75 285.8 262 64.9
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 5.7e-75 285.0 260 66.2
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 7.4e-75 284.6 229 68.6
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.4e-73 280.4 221 70.6
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.4e-73 280.4 259 63.7
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 4.1e-73 278.9 260 66.9
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.2e-72 277.3 264 63.6
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.2e-72 277.3 220 70.0
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 4.5e-72 275.4 221 70.6
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.0e-71 274.2 266 66.9
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 1.7e-71 273.5 235 67.7
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 5.0e-71 271.9 248 62.5
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 6.5e-71 271.6 254 63.8
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 3.6e-69 265.8 245 67.3
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 7.9e-69 264.6 240 65.4
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.3e-68 263.8 261 60.9
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 1.3e-68 263.8 261 60.9
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 2.3e-68 263.1 262 61.1
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 3.0e-68 262.7 256 61.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 8.7e-68 261.2 249 62.2
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.5e-67 260.4 255 60.4
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.9e-67 260.0 209 68.4
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.9e-67 260.0 250 60.4
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.5e-67 259.6 262 60.3
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 9.7e-67 257.7 263 62.4
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 9.7e-67 257.7 231 65.8
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 2.2e-66 256.5 259 62.9
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 6.3e-66 255.0 209 69.4
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 6.3e-66 255.0 258 60.9
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 8.2e-66 254.6 258 60.1
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 8.2e-66 254.6 231 66.2
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.4e-65 253.8 258 61.2
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.8e-65 253.4 231 65.8
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 2.4e-65 253.1 230 65.2
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.1e-65 252.7 260 60.4
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 5.3e-65 251.9 223 64.6
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 3.4e-64 249.2 233 63.5
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 5.9e-64 248.4 253 59.3
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.3e-63 247.3 203 66.5
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.9e-62 243.4 264 57.6
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.2e-62 242.7 223 64.1
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.1e-61 240.0 227 63.9
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.1e-61 240.0 253 61.3
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 2.1e-61 240.0 234 64.5
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 3.6e-61 239.2 258 58.9
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 4.6e-61 238.8 192 69.8
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.3e-60 236.5 198 68.7
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.5e-59 233.8 247 59.5
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.5e-59 233.8 186 71.0
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.3e-58 230.7 239 58.6
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.2e-58 229.9 193 67.9
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 2.8e-58 229.6 258 60.5
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 3.7e-58 229.2 230 63.0
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.4e-57 227.3 265 57.4
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 3.1e-57 226.1 225 59.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.2e-56 224.2 275 58.5
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.5e-56 223.8 262 56.1
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-56 223.0 263 55.5
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 2.6e-56 223.0 159 81.1
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 5.9e-56 221.9 261 55.9
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.3e-55 220.7 243 52.7
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.7e-55 220.3 263 54.8
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 8.5e-55 218.0 230 57.8
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 2.5e-54 216.5 217 59.9
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 2.5e-54 216.5 217 59.9
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 2.5e-54 216.5 217 59.9
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 4.2e-54 215.7 263 56.7
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-53 213.4 249 55.4
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 2.1e-53 213.4 232 56.9
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.7e-53 213.0 261 54.8
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 3.6e-53 212.6 236 56.4
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 6.1e-53 211.8 236 56.8
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 6.1e-53 211.8 236 56.8
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 6.1e-53 211.8 260 56.2
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.4e-52 210.7 239 56.1
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 5.2e-52 208.8 230 53.9
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.5e-51 207.2 232 54.7
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.5e-51 207.2 228 55.3
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 4.4e-51 205.7 230 56.5
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 4.4e-51 205.7 195 62.6
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 4.4e-51 205.7 226 55.8
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 2.2e-50 203.4 207 58.0
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 3.7e-50 202.6 243 54.3
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 4.8e-50 202.2 259 54.1
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 4.8e-50 202.2 243 54.3
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.4e-49 200.7 203 57.6
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.8e-49 200.3 249 52.2
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 4.5e-48 195.7 177 62.7
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.3e-47 194.1 144 74.3
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.7e-47 193.7 176 63.6
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.8e-47 192.6 194 58.2
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.1e-46 191.0 242 50.4
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.1e-46 191.0 259 46.7
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.2e-46 189.1 240 58.3
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.7e-45 185.7 258 50.0
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 8.8e-44 181.4 183 60.1
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 5.7e-43 178.7 147 68.7
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 9.7e-43 177.9 229 50.7
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 9.7e-43 177.9 237 48.1
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.2e-42 176.8 203 54.7
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.8e-42 176.4 171 57.9
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 8.2e-42 174.9 219 51.6
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.4e-41 174.1 120 77.5
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.8e-41 173.7 171 57.3
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 3.1e-41 172.9 136 71.3
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 5.3e-41 172.2 237 46.4
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 7.0e-41 171.8 228 47.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 5.0e-39 165.6 197 53.3
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 1.5e-38 164.1 186 51.6
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 3.2e-38 162.9 257 47.1
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 2.3e-36 156.8 111 74.8
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 2.0e-35 153.7 149 55.7
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.7e-34 150.6 187 52.4
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 4.1e-33 146.0 175 49.1
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 4.1e-33 146.0 134 67.2
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 5.9e-32 142.1 128 65.6
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.8e-26 123.2 104 66.3
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 4.0e-20 102.8 112 54.5
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.5e-19 100.9 224 35.7
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 2.4e-17 93.6 91 62.6
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 5.0e-15 85.9 99 54.5
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 5.0e-15 85.9 166 36.1
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 8.6e-15 85.1 105 48.6
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 1.5e-14 84.3 178 34.8
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 5.6e-14 82.4 62 79.0
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 1.1e-12 78.2 62 62.9
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 2.3e-12 77.0 196 30.6
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.4e-09 67.0 80 47.5
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.2e-08 64.7 236 30.1
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 2.7e-08 63.5 195 31.8
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 3.5e-08 63.2 191 30.9
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 8.6e-07 58.5 152 32.9
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 1.9e-06 57.4 230 28.7
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 2.5e-06 57.0 129 31.8
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 4.3e-06 56.2 194 27.8


User provided reference genes

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