Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.4e-38 162.5 89 100.0
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 2.5e-22 108.6 78 82.1
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 9.8e-19 96.7 63 82.5
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.0e-15 86.7 75 76.0
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.6e-13 79.3 74 63.5
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.0e-12 76.6 75 69.3
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.0e-12 76.6 75 69.3
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.8e-12 75.9 86 57.0
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 3.0e-12 75.1 88 53.4
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 4.0e-12 74.7 69 63.8
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 5.2e-12 74.3 76 57.9
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 5.2e-12 74.3 84 56.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 8.9e-12 73.6 67 59.7
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.9e-12 73.6 60 68.3
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.9e-12 73.6 72 61.1
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.2e-11 73.2 83 53.0
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.6e-11 72.0 90 52.2
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.6e-11 72.0 79 57.0
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.4e-11 71.6 72 56.9
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.4e-11 71.2 74 59.5
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.7e-11 70.9 76 56.6
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.7e-11 70.9 79 55.7
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.5e-11 70.5 74 58.1
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 7.5e-11 70.5 72 56.9
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 7.5e-11 70.5 85 51.8
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 7.5e-11 70.5 68 54.4
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 9.8e-11 70.1 72 56.9
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 9.8e-11 70.1 72 62.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.3e-10 69.7 77 54.5
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.3e-10 69.7 77 57.1
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-10 69.3 70 54.3
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.7e-10 69.3 68 55.9
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.7e-10 69.3 84 53.6
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.2e-10 68.9 62 59.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-10 68.9 73 57.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.2e-10 68.9 72 56.9
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-10 68.9 77 53.2
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-10 68.9 77 53.2
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.2e-10 68.9 64 62.5
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.2e-10 68.9 64 62.5
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.8e-10 68.6 66 59.1
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.8e-10 68.6 62 61.3
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.8e-10 68.6 66 62.1
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.8e-10 68.6 62 64.5
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.8e-10 68.6 64 64.1
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.7e-10 68.2 66 59.1
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 4.9e-10 67.8 65 56.9
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 4.9e-10 67.8 72 59.7
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.3e-10 67.4 70 52.9
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.3e-10 67.4 77 53.2
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 6.3e-10 67.4 68 57.4
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 8.3e-10 67.0 67 52.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 8.3e-10 67.0 75 56.0
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 8.3e-10 67.0 64 59.4
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.3e-10 67.0 64 62.5
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.1e-09 66.6 65 56.9
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.1e-09 66.6 72 55.6
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 1.1e-09 66.6 79 54.4
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.1e-09 66.6 65 61.5
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.1e-09 66.6 72 56.9
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.4e-09 66.2 63 58.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.4e-09 66.2 72 59.7
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.8e-09 65.9 90 51.1
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.8e-09 65.9 68 55.9
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.8e-09 65.9 57 64.9
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 2.4e-09 65.5 74 55.4
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.4e-09 65.5 69 55.1
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.1e-09 65.1 64 59.4
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 3.1e-09 65.1 73 57.5
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 3.1e-09 65.1 75 53.3
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.1e-09 64.7 65 56.9
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.1e-09 64.7 65 56.9
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 5.4e-09 64.3 73 50.7
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 5.4e-09 64.3 65 56.9
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.4e-09 64.3 66 59.1
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 7.0e-09 63.9 82 50.0
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 7.0e-09 63.9 64 62.5
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 7.0e-09 63.9 67 53.7
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 7.0e-09 63.9 74 52.7
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 9.2e-09 63.5 66 57.6
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 9.2e-09 63.5 71 53.5
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 9.2e-09 63.5 67 55.2
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 9.2e-09 63.5 75 50.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.2e-08 63.2 82 47.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.2e-08 63.2 82 50.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.2e-08 63.2 82 47.6
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.2e-08 63.2 67 55.2
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.2e-08 63.2 70 58.6
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.2e-08 63.2 72 51.4
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.2e-08 63.2 66 57.6
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.6e-08 62.8 67 58.2
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.6e-08 62.8 67 58.2
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.6e-08 62.8 55 63.6
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.6e-08 62.8 70 54.3
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.6e-08 62.8 66 54.5
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.6e-08 62.8 72 50.0
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.0e-08 62.4 66 54.5
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.0e-08 62.4 75 50.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.7e-08 62.0 76 47.4
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.7e-08 62.0 79 54.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.7e-08 62.0 62 58.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 2.7e-08 62.0 63 58.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.7e-08 62.0 64 57.8
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.5e-08 61.6 71 57.7
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.5e-08 61.6 67 52.2
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.5e-08 61.2 52 61.5
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 4.5e-08 61.2 63 50.8
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 4.5e-08 61.2 83 47.0
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 4.5e-08 61.2 78 48.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.5e-08 61.2 65 50.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 4.5e-08 61.2 67 52.2
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 7.8e-08 60.5 75 52.0
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 7.8e-08 60.5 71 50.7
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 7.8e-08 60.5 71 50.7
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 7.8e-08 60.5 71 50.7
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.0e-07 60.1 72 50.0
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.0e-07 60.1 72 50.0
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.0e-07 60.1 72 50.0
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.0e-07 60.1 65 55.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.3e-07 59.7 80 47.5
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.3e-07 59.7 67 55.2
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.3e-07 59.7 72 50.0
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.3e-07 59.7 72 50.0
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.3e-07 59.7 66 51.5
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.3e-07 59.7 66 51.5
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 1.7e-07 59.3 71 52.1
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.7e-07 59.3 73 52.1
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.3e-07 58.9 67 52.2
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 2.9e-07 58.5 71 47.9
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 3.9e-07 58.2 68 50.0
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 5.0e-07 57.8 52 59.6
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 6.6e-07 57.4 66 54.5
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 6.6e-07 57.4 81 49.4
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 8.6e-07 57.0 61 57.4
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 8.6e-07 57.0 67 47.8
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.1e-06 56.6 67 52.2
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.5e-06 55.5 68 45.6
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 5.6e-06 54.3 64 51.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 9.5e-06 53.5 81 43.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 9.5e-06 53.5 64 51.6


User provided reference genes

Program Settings