Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 8.9e-279 963.0 498 100.0
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.5e-233 812.0 498 84.5
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.4e-230 801.6 498 83.5
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 7.7e-222 773.9 490 81.0
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.7e-216 755.0 490 79.0
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.8e-210 733.8 478 78.7
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.6e-201 705.7 507 70.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-193 680.2 489 72.6
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 8.3e-192 674.1 502 68.9
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 8.0e-187 657.5 500 69.0
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 3.1e-186 655.6 511 66.1
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 6.8e-186 654.4 511 66.3
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.9e-184 649.0 500 68.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 3.7e-184 648.7 492 69.5
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.4e-184 647.9 510 65.5
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 1.1e-183 647.1 499 68.1
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.4e-183 644.8 435 77.0
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 7.0e-183 644.4 510 66.5
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 9.2e-183 644.0 500 67.6
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-182 643.7 510 64.9
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.7e-182 642.5 504 66.3
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.3e-181 639.4 502 66.5
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.8e-179 632.5 500 65.6
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.2e-177 627.1 500 65.0
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.5e-177 626.7 497 66.0
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.3e-176 623.6 496 65.9
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.1e-175 620.5 496 66.5
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.4e-175 620.2 496 66.7
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.9e-175 619.8 506 62.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.4e-175 619.4 501 66.3
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.0e-173 614.0 500 64.6
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 7.3e-172 607.8 495 63.4
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 4.7e-171 605.1 490 64.5
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 8.1e-171 604.4 512 61.7
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.1e-170 604.0 502 62.2
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.4e-170 603.6 511 62.4
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 3.1e-170 602.4 498 62.9
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.2e-169 600.5 494 62.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.2e-169 600.5 501 61.9
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.2e-169 600.5 504 61.9
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 3.4e-169 599.0 509 62.3
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 4.4e-169 598.6 490 63.9
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 4.4e-169 598.6 502 60.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 3.7e-168 595.5 500 61.2
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 3.7e-168 595.5 497 63.0
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 4.9e-168 595.1 505 61.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 4.9e-168 595.1 513 61.0
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.1e-167 594.0 497 61.6
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.9e-167 593.2 505 61.4
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.4e-167 592.8 505 61.4
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.4e-167 592.8 496 61.7
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.1e-167 592.0 510 62.2
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 5.4e-167 591.7 503 61.0
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 5.4e-167 591.7 503 61.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 1.6e-166 590.1 496 60.3
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 2.1e-166 589.7 502 61.8
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 3.5e-166 589.0 502 61.8
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.3e-165 587.0 510 60.6
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 5.1e-165 585.1 513 58.9
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 5.1e-165 585.1 536 59.3
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 8.6e-165 584.3 499 61.1
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.5e-164 583.6 505 60.4
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 3.3e-164 582.4 501 60.3
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 3.3e-164 582.4 501 60.3
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 4.3e-164 582.0 510 60.4
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 7.3e-164 581.3 573 57.1
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 4.7e-163 578.6 499 60.3
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 6.8e-162 574.7 505 59.4
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.6e-161 572.8 491 61.3
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 7.6e-161 571.2 496 61.7
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.1e-159 567.4 496 60.7
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 4.2e-159 565.5 339 85.5
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 7.1e-159 564.7 505 58.2
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 7.8e-158 561.2 499 59.7
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.0e-157 560.8 511 60.1
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 3.9e-157 558.9 496 61.7
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 6.6e-157 558.1 457 64.3
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.1e-156 557.4 496 59.7
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.9e-156 556.6 450 65.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 2.1e-155 553.1 515 57.5
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.2e-153 547.4 457 64.8
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.4e-152 541.6 521 58.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 2.7e-150 536.2 382 74.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 8.7e-149 531.2 386 71.5
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 5.6e-148 528.5 447 62.2
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.3e-147 527.3 489 56.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.0e-146 522.3 490 57.3
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.4e-145 519.2 421 65.1
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.9e-143 513.5 502 56.2
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 6.0e-142 508.4 462 58.2
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.5e-140 503.8 433 59.4
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.4e-138 496.5 394 67.0
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 2.9e-136 489.6 494 55.1
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 9.3e-135 484.6 373 66.2
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.1e-130 471.1 491 52.5
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 6.9e-130 468.4 476 56.1
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.4e-121 439.5 384 60.4
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-120 437.2 498 52.2
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.9e-119 433.7 344 63.4
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 9.4e-119 431.4 355 61.7
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.2e-118 431.0 385 59.2
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 3.6e-118 429.5 613 46.7
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 2.3e-117 426.8 493 46.9
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 6.7e-117 425.2 500 49.2
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 4.5e-113 412.5 479 51.4
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.0e-112 411.4 590 44.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 5.0e-112 409.1 454 51.3
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 6.1e-110 402.1 338 62.4
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 8.2e-107 391.7 511 45.0
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.8e-106 390.6 341 58.1
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 4.2e-103 379.4 331 58.9
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-97 359.4 339 58.7
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-95 354.4 366 56.0
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.2e-95 353.2 271 67.2
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 3.2e-95 353.2 489 43.4
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.5e-92 344.4 263 66.5
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 4.1e-90 336.3 299 57.9
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.6e-89 334.3 283 59.4
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 7.7e-89 332.0 251 68.1
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 7.2e-87 325.5 367 49.0
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 3.1e-82 310.1 234 68.4
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.0e-77 295.0 253 57.7
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-77 295.0 243 64.6
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 4.0e-77 293.1 361 48.2
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.6e-70 271.2 216 64.4
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-69 268.1 171 73.1
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 4.1e-66 256.5 180 68.3
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.0e-64 249.6 218 58.3
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-61 241.5 260 56.5
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.2e-61 239.6 377 41.1
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 4.9e-59 233.0 181 69.1
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-58 231.5 207 59.9
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-53 215.3 200 53.5
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-53 214.2 410 37.3
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-52 211.5 206 60.7
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.5e-47 194.9 501 32.5
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.1e-45 187.2 210 50.5
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 2.6e-44 184.1 120 74.2
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.6e-41 173.3 184 54.3
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.4e-37 161.0 149 55.7
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 5.4e-34 149.8 433 29.3
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 2.1e-30 137.9 104 68.3
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 4.8e-30 136.7 150 48.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 1.3e-27 128.6 95 69.5
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.9e-27 127.5 119 60.5
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 6.4e-27 126.3 522 27.2
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 5.5e-26 123.2 128 55.5
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.5e-25 120.6 128 53.9
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-25 120.2 128 53.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-19 101.7 91 48.4
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-18 97.8 64 75.0
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.5e-18 96.7 125 44.8
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-14 85.5 90 51.1
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 2.1e-14 84.7 64 65.6
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.8e-14 84.3 97 46.4
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 3.7e-14 84.0 87 46.0
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.3e-14 83.2 87 55.2
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-11 74.3 87 44.8
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.8e-11 73.9 84 47.6
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 6.5e-11 73.2 54 64.8
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.9e-08 63.9 38 78.9
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 2.5e-07 61.2 101 41.6


User provided reference genes

Program Settings