Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 7.6e-104 380.6 201 100.0
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.8e-82 308.9 206 80.6
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.3e-79 300.1 205 80.0
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 5.0e-79 298.1 205 79.5
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 5.5e-78 294.7 203 74.9
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 3.6e-77 292.0 203 75.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.8e-76 289.7 202 74.8
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-75 286.2 205 74.6
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-75 286.2 205 74.6
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.5e-75 284.3 201 72.6
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 7.5e-75 284.3 203 72.9
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 9.7e-75 283.9 204 74.0
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 8.2e-74 280.8 206 71.8
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 8.2e-74 280.8 236 68.2
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.1e-73 280.4 203 72.9
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.1e-73 280.4 203 72.9
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.4e-73 280.0 147 94.6
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.1e-73 278.5 206 75.7
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.1e-73 278.5 203 72.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 5.3e-73 278.1 202 70.8
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 9.1e-73 277.3 204 72.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.5e-72 275.4 147 92.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 5.9e-72 274.6 201 70.6
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 7.7e-72 274.2 204 71.1
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 7.7e-72 274.2 203 70.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.7e-71 273.1 202 72.3
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.7e-71 273.1 203 70.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.7e-71 273.1 201 71.6
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.9e-71 272.3 202 70.3
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.1e-70 270.4 205 71.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.1e-70 270.4 202 71.3
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.2e-70 268.9 202 70.3
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.5e-70 268.1 202 70.3
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.5e-70 268.1 148 90.5
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 5.5e-70 268.1 204 72.1
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.2e-70 267.7 201 70.1
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 7.2e-70 267.7 201 71.1
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.2e-69 266.9 203 68.5
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.2e-69 266.9 202 70.3
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.2e-69 266.9 201 67.2
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.1e-69 266.2 201 66.2
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.7e-69 265.8 201 68.7
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.6e-69 265.4 148 89.9
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 3.6e-69 265.4 210 69.5
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 6.1e-69 264.6 195 70.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.0e-68 263.8 204 70.1
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.0e-68 263.8 201 68.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.8e-68 263.1 203 71.4
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.3e-68 262.7 204 70.6
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 5.2e-68 261.5 201 70.1
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.5e-67 260.0 201 67.2
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 1.5e-67 260.0 201 69.7
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.7e-67 258.1 186 69.9
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 7.5e-67 257.7 209 67.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.2e-66 256.1 167 74.9
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 2.8e-66 255.8 220 65.0
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 6.3e-66 254.6 200 67.5
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.4e-65 253.4 179 73.2
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.4e-65 253.4 179 73.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 7.0e-65 251.1 209 66.0
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.2e-64 250.4 179 69.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.2e-64 250.4 167 74.9
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 4.5e-64 248.4 145 83.4
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.3e-63 246.9 202 64.9
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.7e-63 246.5 173 71.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.7e-63 246.5 163 73.6
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.7e-63 246.5 148 78.4
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.9e-63 245.7 212 64.6
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.9e-63 245.7 148 80.4
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.1e-62 243.8 204 63.7
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.5e-62 243.4 168 72.6
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 2.5e-62 242.7 151 78.1
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 2.5e-62 242.7 148 81.1
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 5.5e-62 241.5 148 78.4
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 9.5e-62 240.7 248 56.9
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.1e-61 239.6 149 80.5
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.8e-61 239.2 190 66.8
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 6.1e-61 238.0 212 62.3
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 6.1e-61 238.0 149 77.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 8.0e-61 237.7 203 61.6
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.0e-60 237.3 147 76.2
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 2.3e-60 236.1 167 72.5
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 2.3e-60 236.1 207 63.3
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 5.2e-60 235.0 148 76.4
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 6.8e-60 234.6 190 64.7
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 6.8e-60 234.6 213 61.5
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.5e-59 233.4 148 77.7
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.0e-59 233.0 210 61.4
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-59 233.0 147 77.6
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 4.4e-59 231.9 164 72.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 5.7e-59 231.5 178 66.9
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 5.7e-59 231.5 212 61.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 5.7e-59 231.5 146 75.3
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 7.5e-59 231.1 240 55.8
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 9.8e-59 230.7 148 77.0
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-58 230.3 169 71.0
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-58 230.3 169 71.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.3e-58 230.3 141 80.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.2e-58 229.6 146 76.7
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.2e-58 229.6 201 60.7
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 2.8e-58 229.2 148 75.7
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.1e-57 227.3 215 60.0
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.1e-57 227.3 202 61.9
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-57 226.9 203 63.1
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-57 226.5 202 62.9
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-57 226.5 202 62.9
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.4e-57 226.1 161 70.8
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 2.4e-57 226.1 145 76.6
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.4e-57 226.1 175 68.0
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 5.4e-57 224.9 204 61.3
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 5.4e-57 224.9 203 62.1
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 7.0e-57 224.6 148 76.4
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 7.0e-57 224.6 160 71.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 9.2e-57 224.2 187 63.1
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-56 223.8 203 62.1
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.9e-56 221.5 204 61.3
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 7.8e-56 221.1 147 74.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.1e-54 217.2 187 62.6
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 3.3e-54 215.7 228 59.6
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.3e-54 215.7 219 58.4
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.3e-54 215.7 219 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 4.3e-54 215.3 153 68.0
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.3e-54 215.3 201 56.7
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 2.3e-52 209.5 122 83.6
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 4.0e-52 208.8 170 64.1
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 8.9e-52 207.6 156 71.2
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.2e-51 207.2 168 64.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 2.6e-51 206.1 219 56.2
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.8e-51 204.9 207 56.0
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.5e-51 204.5 168 63.7
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.2e-50 203.0 143 69.2
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 4.9e-50 201.8 122 77.9
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 6.4e-50 201.4 139 70.5
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.5e-48 195.7 200 53.0
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 5.0e-47 191.8 192 52.1
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.1e-46 190.7 196 55.1
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.5e-46 190.3 192 57.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.2e-45 187.2 156 61.5
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 2.3e-44 183.0 174 59.2
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 3.1e-44 182.6 187 56.7
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.0e-44 182.2 149 61.1
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 5.2e-44 181.8 149 65.1
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 7.5e-43 177.9 157 59.2
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 9.8e-43 177.6 106 80.2
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-41 174.1 109 79.8
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.4e-41 172.9 145 63.4
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 7.3e-38 161.4 115 70.4
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-37 160.2 165 55.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 8.3e-34 147.9 93 75.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 7.1e-33 144.8 82 84.1
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 9.2e-33 144.4 89 78.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.0e-31 141.0 126 63.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 3.1e-28 129.4 136 53.7
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.7e-24 116.3 176 42.6
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.2e-21 105.1 96 56.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 3.1e-20 102.8 153 39.2
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 9.9e-19 97.8 82 62.2
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 8.4e-18 94.7 180 33.3
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 9.6e-14 81.3 77 55.8
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.3e-10 70.9 49 71.4
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 2.2e-10 70.1 186 30.1
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.2e-08 64.3 38 73.7
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 1.1e-06 57.8 38 73.7
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 4.3e-06 55.8 87 43.7
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 7.4e-06 55.1 32 75.0


User provided reference genes

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