Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 2.4e-142 508.8 260 100.0
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 1.1e-105 387.1 259 73.7
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 7.1e-102 374.4 263 75.7
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 5.3e-97 358.2 260 71.5
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 4.6e-93 345.1 260 70.4
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.5e-91 340.1 260 69.2
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 4.8e-90 335.1 289 64.0
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 2.3e-84 316.2 274 62.0
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 6.9e-81 304.7 260 60.4
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 6.0e-77 291.6 261 58.2
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 6.9e-73 278.1 231 60.2
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.0e-71 274.2 264 56.4
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 3.1e-65 252.7 207 56.5
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 1.5e-64 250.4 255 51.4
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 2.6e-64 249.6 271 53.1
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 4.5e-64 248.8 203 57.6
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 2.2e-63 246.5 199 57.3
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 3.8e-63 245.7 203 58.1
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 7.2e-62 241.5 197 65.0
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.6e-61 240.4 260 51.9
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 2.1e-61 240.0 200 58.5
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 3.6e-61 239.2 201 57.7
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 3.6e-61 239.2 203 56.2
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.8e-60 236.9 251 50.6
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 2.3e-60 236.5 204 59.3
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 2.3e-60 236.5 202 57.9
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 3.0e-60 236.1 249 51.8
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 3.9e-60 235.7 207 54.1
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 5.1e-60 235.3 216 55.1
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 8.8e-60 234.6 207 53.1
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 1.5e-59 233.8 207 51.7
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.5e-59 233.8 241 51.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.6e-59 233.0 256 48.0
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 9.7e-59 231.1 223 52.0
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 1.3e-58 230.7 232 49.6
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.8e-58 229.6 238 50.0
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.1e-57 227.6 204 54.4
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.4e-57 226.5 256 47.7
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 2.4e-57 226.5 238 50.0
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 9.1e-57 224.6 236 50.8
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 2.0e-56 223.4 205 55.1
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.4e-56 222.6 238 48.7
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 4.5e-56 222.2 205 54.6
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.7e-55 220.3 255 49.0
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 8.5e-55 218.0 196 51.0
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 3.2e-54 216.1 254 45.7
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 5.5e-54 215.3 237 48.9
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 9.4e-54 214.5 251 46.2
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.6e-53 213.8 260 45.0
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.6e-53 213.8 230 47.4
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.6e-53 213.8 220 51.4
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 4.7e-53 212.2 245 47.8
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 6.1e-53 211.8 196 51.0
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 6.1e-53 211.8 239 46.9
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 1.0e-52 211.1 204 52.0
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 1.8e-52 210.3 393 36.9
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.8e-52 210.3 255 46.3
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.8e-52 210.3 201 51.2
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 3.9e-52 209.1 204 49.5
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 3.9e-52 209.1 231 45.0
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 3.9e-52 209.1 201 51.2
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 8.8e-52 208.0 213 49.8
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 1.1e-51 207.6 201 53.7
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 3.3e-51 206.1 212 49.5
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 3.3e-51 206.1 212 49.5
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 7.4e-51 204.9 236 45.8
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.7e-50 203.8 239 46.4
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 6.3e-50 201.8 260 43.8
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.1e-49 201.1 258 45.3
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.8e-49 200.3 188 48.9
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 2.4e-49 199.9 258 45.3
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 7.7e-48 194.9 220 44.1
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 1.3e-47 194.1 235 45.1
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.4e-44 184.1 190 48.9
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 4.0e-44 182.6 227 45.8
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 6.7e-44 181.8 210 46.2
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 8.8e-44 181.4 171 49.7
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 1.2e-43 181.0 197 46.7
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 7.5e-43 178.3 167 51.5
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 9.7e-43 177.9 166 49.4
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 9.7e-43 177.9 234 43.6
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 9.7e-43 177.9 257 41.2
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 3.7e-42 176.0 242 44.2
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 5.3e-41 172.2 160 52.5
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.6e-40 170.6 168 48.2
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 1.7e-39 167.2 326 35.6
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.0e-39 165.6 197 42.6
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 7.2e-38 161.8 162 52.5
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.6e-37 160.6 198 41.9
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 4.7e-37 159.1 166 47.0
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.5e-35 154.1 169 46.7
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 2.6e-35 153.3 198 42.4
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 4.8e-34 149.1 135 48.9
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 6.3e-34 148.7 173 43.9
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.3e-31 141.0 162 49.4
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.5e-30 137.5 166 45.8
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 4.7e-29 132.5 132 58.3
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 1.3e-26 124.4 93 63.4
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 5.6e-22 109.0 189 32.8
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 5.6e-22 109.0 176 40.3
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 1.1e-17 94.7 198 30.8
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.0e-15 88.2 185 28.6
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.0e-15 88.2 185 28.6
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 3.9e-15 86.3 76 51.3
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 6.6e-15 85.5 185 29.2
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 7.3e-14 82.0 219 26.0
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 7.3e-14 82.0 185 28.1
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 1.2e-13 81.3 185 26.5
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 1.6e-13 80.9 207 26.6
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 2.8e-13 80.1 185 27.0
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 6.2e-13 79.0 184 27.2
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 1.8e-12 77.4 210 25.2
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 3.1e-12 76.6 82 41.5
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 7.5e-11 72.0 186 26.9
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 2.2e-10 70.5 260 24.6
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 3.7e-10 69.7 67 55.2
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 1.1e-09 68.2 82 42.7
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 9.2e-09 65.1 137 37.2
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 4.6e-08 62.8 54 55.6
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 7.8e-08 62.0 68 48.5
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 3.0e-07 60.1 115 40.9
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 1.5e-06 57.8 115 35.7
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 1.9e-06 57.4 115 34.8


User provided reference genes

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