Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 3847.0 1962 100.0
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 3398.6 1963 88.7
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 3225.3 1967 84.6
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 3167.9 1967 83.1
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 3149.8 1983 82.3
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 3086.6 2014 80.2
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 3075.4 1975 81.3
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2960.2 1985 78.6
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2849.3 1993 74.6
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2837.8 2015 74.0
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2801.9 1993 73.8
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2776.1 2027 72.4
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2748.4 2117 69.8
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2728.7 2035 70.8
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2704.5 1989 71.6
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2697.9 1992 71.7
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2694.8 1992 70.9
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2656.7 1994 70.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2651.3 2000 69.8
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2615.9 1996 69.5
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2612.8 1978 69.7
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2610.1 1988 69.7
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2605.1 1978 69.5
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2602.4 1983 68.8
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2591.2 1984 69.3
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2590.1 2005 68.9
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2584.7 1986 68.4
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2583.5 1985 69.0
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2560.4 1982 68.1
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2544.2 1981 67.5
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2528.4 1984 68.2
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2528.1 1989 67.6
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2525.7 1992 67.5
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2520.3 1999 67.2
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2517.7 2092 64.5
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2510.3 1981 68.1
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2508.4 1988 68.1
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2498.4 2047 65.7
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2498.0 1990 67.7
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2488.0 2005 66.0
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2457.6 1841 71.0
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2454.1 1991 66.7
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2449.9 1989 66.0
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2445.2 1968 66.8
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2415.6 2095 62.9
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2409.0 1986 65.9
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2379.4 2015 63.7
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2337.0 2007 63.6
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2321.6 2001 63.9
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2316.2 2005 63.0
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2310.0 2023 63.2
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2296.2 2065 61.4
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2281.1 2005 60.9
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2280.8 1984 62.0
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2278.8 2007 61.7
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2278.1 1998 62.5
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2275.7 1998 62.9
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2275.4 1989 61.2
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2271.5 1671 72.0
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2268.4 2009 61.7
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2251.5 1990 60.3
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2242.6 2059 60.3
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2239.2 1993 61.2
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2228.0 1992 61.0
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2227.2 1992 60.8
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2223.7 1992 60.8
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2218.4 1990 61.0
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2214.5 1996 60.7
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2213.7 1991 60.8
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2179.4 2002 60.7
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2162.5 2010 59.2
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2158.3 2019 59.5
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2154.8 1987 60.1
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2149.8 1986 60.0
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2148.6 2005 59.6
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2144.4 1988 60.0
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2143.6 1985 59.0
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2142.5 2020 58.9
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2137.5 1987 58.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2132.8 1987 59.0
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2123.6 2018 59.1
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2113.6 1997 59.2
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2076.6 1908 60.6
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2069.7 2015 58.3
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2067.7 2163 55.7
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2046.6 1892 59.5
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1977.6 1789 60.1
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1973.0 1986 56.2
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1881.3 1667 60.9
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1873.6 1761 58.7
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1849.7 1422 69.2
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1848.6 2049 52.4
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1728.0 1493 62.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1723.0 1359 67.8
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1681.4 1728 56.2
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1629.8 1997 49.3
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1589.7 1228 66.9
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1448.0 1187 66.7
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1435.2 2026 45.5
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1424.8 1913 45.8
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1308.9 1185 61.9
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1302.0 1610 47.1
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1238.4 1405 51.0
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 0.0e+00 1119.4 773 74.3
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1116.3 776 74.7
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.5e-308 1063.9 772 72.0
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 9.6e-284 981.5 976 55.1
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 4.8e-275 952.6 1047 52.1
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.8e-274 950.7 839 60.1
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 5.3e-274 949.1 2151 35.3
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.9e-260 904.0 1190 46.0
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.4e-255 887.9 2160 32.9
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.1e-242 845.1 1278 43.7
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.0e-208 732.3 1969 32.7
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 9.5e-199 699.1 1019 44.4
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 7.0e-186 656.4 654 58.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 1.3e-179 635.6 1930 30.5
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 4.3e-175 620.5 1637 32.4
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 5.2e-173 613.6 428 71.5
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.4e-162 578.2 587 53.3
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.7e-161 574.7 542 57.0
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 4.0e-141 507.7 319 79.3
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 7.4e-127 460.3 503 52.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-116 426.4 318 71.4
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-114 419.9 535 46.2
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 6.7e-112 410.6 782 38.4
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 3.5e-108 398.3 381 63.3
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 7.0e-101 374.0 384 54.2
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 4.4e-95 354.8 356 52.2
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-92 346.7 219 78.1
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.6e-89 335.1 283 62.9
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.2e-86 325.9 240 70.4
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 1.7e-83 316.2 193 80.8
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 2.3e-83 315.8 210 74.8
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 4.0e-72 278.5 165 81.8
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-70 271.2 1094 26.4
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 7.1e-69 267.7 298 52.0
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 7.8e-68 264.2 211 67.8
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 7.3e-66 257.7 162 77.8
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 4.7e-65 255.0 424 41.3
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.4e-61 241.5 159 74.8
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 3.9e-59 235.3 264 51.5
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 2.1e-57 229.6 294 47.6
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 3.4e-55 222.2 246 52.0
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 2.9e-54 219.2 387 44.2
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 2.1e-52 213.0 334 41.3
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.3e-51 209.5 208 55.3
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.2e-44 187.2 612 28.9
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.1e-44 186.4 125 71.2
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.3e-42 179.1 330 36.7
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 2.8e-41 176.0 130 74.6
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 6.2e-33 148.3 462 32.9
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 5.3e-32 145.2 99 71.7
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.5e-26 127.1 72 80.6
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 6.3e-25 121.7 131 51.1
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 8.2e-25 121.3 112 66.1
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 8.2e-25 121.3 112 66.1
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 1.2e-23 117.5 127 55.9
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.3e-22 114.0 146 56.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-22 114.0 146 56.8
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-19 104.0 138 50.0
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-17 97.4 57 75.4
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 8.2e-17 94.7 157 43.3
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.4e-16 94.0 67 71.6
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.4e-16 94.0 115 47.0
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 2.9e-14 86.3 75 58.7
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 2.9e-14 86.3 75 58.7
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 2.3e-11 76.6 114 40.4
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.1e-10 74.3 164 36.6
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.4e-08 67.4 99 43.4
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-08 65.5 87 46.0
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 4.5e-07 62.4 135 36.3
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 7.7e-07 61.6 79 36.7
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 5.0e-06 58.9 85 40.0


User provided reference genes

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