Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 8.0e-82 307.0 150 100.0
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 2.7e-37 159.1 128 69.5
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 3.5e-37 158.7 117 69.2
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 6.0e-37 157.9 124 67.7
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 7.9e-37 157.5 115 67.0
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 4.3e-35 151.8 121 66.1
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 1.1e-33 147.1 121 66.1
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 1.4e-33 146.7 128 66.4
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 1.8e-33 146.4 117 62.4
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 5.8e-32 141.4 121 63.6
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.6e-32 141.0 122 63.1
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 8.4e-31 137.5 120 62.5
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 1.4e-30 136.7 118 62.7
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 2.1e-29 132.9 116 57.8
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 7.9e-29 131.0 119 59.7
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 4.0e-25 118.6 127 53.5
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 4.0e-25 118.6 116 54.3
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 2.0e-24 116.3 119 52.9
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 3.4e-24 115.5 122 54.1
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.0e-23 114.0 122 56.6
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 1.3e-23 113.6 116 56.9
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 1.3e-23 113.6 122 55.7
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 1.3e-23 113.6 122 54.9
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 2.2e-23 112.8 119 52.1
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 3.8e-23 112.1 121 54.5
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 1.4e-22 110.2 121 54.5
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 1.4e-22 110.2 123 50.4
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 1.9e-22 109.8 103 56.3
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 5.5e-22 108.2 121 52.1
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 1.2e-21 107.1 123 48.8
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.8e-20 103.2 119 53.8
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 3.0e-20 102.4 120 53.3
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 4.3e-19 98.6 125 47.2
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 5.7e-19 98.2 140 47.1
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 1.3e-18 97.1 118 55.1
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 1.3e-18 97.1 143 47.6
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 2.2e-18 96.3 128 46.9
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 2.2e-18 96.3 93 55.9
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 3.7e-18 95.5 122 48.4
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 3.7e-18 95.5 117 57.3
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 3.7e-18 95.5 124 47.6
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 4.8e-18 95.1 142 43.7
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 4.8e-18 95.1 122 48.4
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 1.8e-17 93.2 120 45.8
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 1.8e-17 93.2 133 48.1
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 2.4e-17 92.8 145 42.1
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 2.4e-17 92.8 142 43.7
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 2.4e-17 92.8 114 48.2
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 3.1e-17 92.4 127 50.4
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 4.1e-17 92.0 132 47.0
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 6.9e-17 91.3 117 45.3
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 2.0e-16 89.7 124 44.4
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 2.6e-16 89.4 136 44.1
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 3.4e-16 89.0 146 40.4
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 4.5e-16 88.6 130 43.1
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 4.5e-16 88.6 140 43.6
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 4.5e-16 88.6 140 43.6
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 4.5e-16 88.6 106 48.1
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 5.9e-16 88.2 118 46.6
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 5.9e-16 88.2 137 40.1
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 5.9e-16 88.2 125 42.4
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 5.9e-16 88.2 135 48.9
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 5.9e-16 88.2 135 48.1
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 2.2e-15 86.3 135 43.7
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 2.2e-15 86.3 135 43.7
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 2.2e-15 86.3 147 38.1
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 1.4e-14 83.6 143 40.6
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 2.5e-14 82.8 137 40.9
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 7.2e-14 81.3 148 37.2
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 9.3e-14 80.9 124 46.0
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 4.6e-13 78.6 121 41.3
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 1.4e-12 77.0 140 36.4
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 1.4e-12 77.0 141 39.7
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 6.7e-12 74.7 109 47.7
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 1.5e-11 73.6 123 44.7
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 2.5e-11 72.8 125 42.4
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 1.4e-09 67.0 117 41.9
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 1.8e-09 66.6 115 40.0
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 2.4e-09 66.2 130 41.5
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 2.4e-09 66.2 101 48.5
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 9.1e-09 64.3 130 40.0
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 2.6e-08 62.8 131 34.4
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 3.4e-08 62.4 120 40.0
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 5.9e-08 61.6 119 39.5
FAN05G3304 Fragaria x ananassa HOM05D067380 ORTHO05D009181 3.8e-07 58.9 50 66.0
FAN05G0870 Fragaria x ananassa HOM05D067380 ORTHO05D009181 1.4e-06 57.0 50 64.0
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 1.4e-06 57.0 130 37.7


User provided reference genes

Program Settings